Multiple testing corrections in quantitative proteomics: A useful but blunt tool

SWATH Mass Spectrometry Performance Using Extended Peptide MS/MS Assay Libraries

(2016) Jemma X. Wu et al.   MOLECULAR & CELLULAR PROTEOMICS

Improving Label-Free Quantitative Proteomics Strategies by Distributing Shared Peptides and Stabilizing Variance

(2015) Ying Zhang et al.   ANALYTICAL CHEMISTRY

MSstats: an R package for statistical analysis of quantitative mass spectrometry-based proteomic experiments

(2014) Meena Choi et al.   BIOINFORMATICS

Delayed Fragmentation and Optimized Isolation Width Settings for Improvement of Protein Identification and Accuracy of Isobaric Mass Tag Quantification on Orbitrap-Type Mass Spectrometers

(2011) Mikhail M. Savitski et al.   ANALYTICAL CHEMISTRY

General Statistical Modeling of Data from Protein Relative Expression Isobaric Tags

(2011) Florian P. Breitwieser et al.   JOURNAL OF PROTEOME RESEARCH

Multiple Hypothesis Testing in Proteomics: A Strategy for Experimental Work

(2011) Angel P. Diz et al.   MOLECULAR & CELLULAR PROTEOMICS

iTRAQ Underestimation in Simple and Complex Mixtures: “The Good, the Bad and the Ugly”

(2009) Saw Yen Ow et al.   JOURNAL OF PROTEOME RESEARCH

A Statistical Model for iTRAQ Data Analysis

(2008) Elizabeth G. Hill et al.   JOURNAL OF PROTEOME RESEARCH

Statistical Analysis of Relative Labeled Mass Spectrometry Data from Complex Samples Using ANOVA

(2008) Ann L. Oberg et al.   JOURNAL OF PROTEOME RESEARCH