Comparison of native and non-native ubiquitin oligomers reveals analogous structures and reactivities
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Title
Comparison of native and non-native ubiquitin oligomers reveals analogous structures and reactivities
Authors
Keywords
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Journal
PROTEIN SCIENCE
Volume 25, Issue 2, Pages 456-471
Publisher
Wiley
Online
2015-10-28
DOI
10.1002/pro.2834
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Note: Only part of the references are listed.- DUBs, the regulation of cell identity and disease: Figure 6
- (2015) J. Heideker et al. BIOCHEMICAL JOURNAL
- Peeling away the layers of ubiquitin signaling complexities with synthetic ubiquitin–protein conjugates
- (2015) Grace H Pham et al. CURRENT OPINION IN CHEMICAL BIOLOGY
- Using Chemistry to Investigate the Molecular Consequences of Protein Ubiquitylation
- (2014) Tharindumala Abeywardana et al. CHEMBIOCHEM
- Screening of DUB activity and specificity by MALDI-TOF mass spectrometry
- (2014) Maria Stella Ritorto et al. Nature Communications
- PolyUbiquitin Chain Linkage Topology Selects the Functions from the Underlying Binding Landscape
- (2014) Yong Wang et al. PLoS Computational Biology
- Super-Resolution in Solution X-Ray Scattering and Its Applications to Structural Systems Biology
- (2013) Robert P. Rambo et al. Annual Review of Biophysics
- Accurate SAXS Profile Computation and its Assessment by Contrast Variation Experiments
- (2013) Dina Schneidman-Duhovny et al. BIOPHYSICAL JOURNAL
- OTU Deubiquitinases Reveal Mechanisms of Linkage Specificity and Enable Ubiquitin Chain Restriction Analysis
- (2013) Tycho E.T. Mevissen et al. CELL
- Fast-SAXS-pro: A unified approach to computing SAXS profiles of DNA, RNA, protein, and their complexes
- (2013) Krishnakumar M. Ravikumar et al. JOURNAL OF CHEMICAL PHYSICS
- Improved Generalized Born Solvent Model Parameters for Protein Simulations
- (2013) Hai Nguyen et al. Journal of Chemical Theory and Computation
- Recovering a Representative Conformational Ensemble from Underdetermined Macromolecular Structural Data
- (2013) Konstantin Berlin et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Assembly, analysis and architecture of atypical ubiquitin chains
- (2013) Manuela K Hospenthal et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Naturally and synthetically linked lys48 diubiquitin: a QM/MM study
- (2013) Thomas Dresselhaus et al. RSC Advances
- Nonenzymatic Polymerization of Ubiquitin: Single-Step Synthesis and Isolation of Discrete Ubiquitin Oligomers
- (2012) Vivian H. Trang et al. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
- Chemistry and Biology of the Ubiquitin Signal
- (2012) Liat Spasser et al. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
- The Ubiquitin Code
- (2012) David Komander et al. Annual Review of Biochemistry
- Small-Angle X-Ray Scattering on Biological Macromolecules and Nanocomposites in Solution
- (2012) Clement E. Blanchet et al. Annual Review of Physical Chemistry
- Structural and biochemical studies of the open state of Lys48-linked diubiquitin
- (2012) Ming-Yih Lai et al. BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH
- New developments in theATSASprogram package for small-angle scattering data analysis
- (2012) Maxim V. Petoukhov et al. JOURNAL OF APPLIED CRYSTALLOGRAPHY
- Forging Isopeptide Bonds Using Thiol–Ene Chemistry: Site-Specific Coupling of Ubiquitin Molecules for Studying the Activity of Isopeptidases
- (2012) Ellen M. Valkevich et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- OTUB1 Co-opts Lys48-Linked Ubiquitin Recognition to Suppress E2 Enzyme Function
- (2012) Yu-Chi Juang et al. MOLECULAR CELL
- Ubiquitin chain conformation regulates recognition and activity of interacting proteins
- (2012) Yu Ye et al. NATURE
- Promiscuous Interactions of gp78 E3 Ligase CUE Domain with Polyubiquitin Chains
- (2012) Shan Liu et al. STRUCTURE
- An overview of the Amber biomolecular simulation package
- (2012) Romelia Salomon-Ferrer et al. Wiley Interdisciplinary Reviews-Computational Molecular Science
- Unraveling the Complexity of Ubiquitin Signaling
- (2011) Eric R. Strieter et al. ACS Chemical Biology
- Large-scale motions in the adenylate kinase solution ensemble: Coarse-grained simulations and comparison with solution X-ray scattering
- (2011) Michael D. Daily et al. CHEMICAL PHYSICS
- Conformational Dynamics of Wild-type Lys-48-linked Diubiquitin in Solution
- (2011) Takashi Hirano et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Polyubiquitin Linkage Profiles in Three Models of Proteolytic Stress Suggest the Etiology of Alzheimer Disease
- (2011) Eric B. Dammer et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Structural and Thermodynamic Comparison of the Catalytic Domain of AMSH and AMSH-LP: Nearly Identical Fold but Different Stability
- (2011) Christopher W. Davies et al. JOURNAL OF MOLECULAR BIOLOGY
- A Perturbed Ubiquitin Landscape Distinguishes Between Ubiquitin in Trafficking and in Proteolysis
- (2011) Inbal Ziv et al. MOLECULAR & CELLULAR PROTEOMICS
- A Proteome-wide, Quantitative Survey of In Vivo Ubiquitylation Sites Reveals Widespread Regulatory Roles
- (2011) Sebastian A. Wagner et al. MOLECULAR & CELLULAR PROTEOMICS
- Systematic and Quantitative Assessment of the Ubiquitin-Modified Proteome
- (2011) Woong Kim et al. MOLECULAR CELL
- The spatial and temporal organization of ubiquitin networks
- (2011) Caroline Grabbe et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- SAXS Ensemble Refinement of ESCRT-III CHMP3 Conformational Transitions
- (2011) Bartosz Różycki et al. STRUCTURE
- Preparation of Distinct Ubiquitin Chain Reagents of High Purity and Yield
- (2011) Ken C. Dong et al. STRUCTURE
- Proteins at Work
- (2010) Michael A. Jamros et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- RNA Structure Determination Using SAXS Data
- (2010) Sichun Yang et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Lys11-linked ubiquitin chains adopt compact conformations and are preferentially hydrolyzed by the deubiquitinase Cezanne
- (2010) Anja Bremm et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- FoXS: a web server for rapid computation and fitting of SAXS profiles
- (2010) D. Schneidman-Duhovny et al. NUCLEIC ACIDS RESEARCH
- Multidomain assembled states of Hck tyrosine kinase in solution
- (2010) S. Yang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Evaluating the Performance of the ff99SB Force Field Based on NMR Scalar Coupling Data
- (2009) Lauren Wickstrom et al. BIOPHYSICAL JOURNAL
- K63-specific deubiquitination by two JAMM/MPN+ complexes: BRISC-associated Brcc36 and proteasomal Poh1
- (2009) Eric M Cooper et al. EMBO JOURNAL
- Structural basis for specific recognition of Lys 63-linked polyubiquitin chains by tandem UIMs of RAP80
- (2009) Yusuke Sato et al. EMBO JOURNAL
- Structural basis for specific recognition of Lys 63-linked polyubiquitin chains by NZF domains of TAB2 and TAB3
- (2009) Yusuke Sato et al. EMBO JOURNAL
- Molecular discrimination of structurally equivalent Lys 63-linked and linear polyubiquitin chains
- (2009) David Komander et al. EMBO REPORTS
- Crystal structure of the NEMO ubiquitin-binding domain in complex with Lys 63-linked di-ubiquitin
- (2009) Azusa Yoshikawa et al. FEBS LETTERS
- Structure and flexibility within proteins as identified through small angle X-ray scattering
- (2009) M. Pelikan et al. GENERAL PHYSIOLOGY AND BIOPHYSICS
- Structure of the S5a:K48-Linked Diubiquitin Complex and Its Interactions with Rpn13
- (2009) Naixia Zhang et al. MOLECULAR CELL
- Breaking the chains: structure and function of the deubiquitinases
- (2009) David Komander et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Two-sided ubiquitin binding explains specificity of the TAB2 NZF domain
- (2009) Yogesh Kulathu et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Crystal structures of Lys-63-linked tri- and di-ubiquitin reveal a highly extended chain architecture
- (2009) Stephen D. Weeks et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Structural basis and specificity of human otubain 1-mediated deubiquitination
- (2008) Mariola J. Edelmann et al. BIOCHEMICAL JOURNAL
- Ubiquitin Chain Editing Revealed by Polyubiquitin Linkage-Specific Antibodies
- (2008) Kim Newton et al. CELL
- Erratum: Structural basis for specific cleavage of Lys 63-linked polyubiquitin chains
- (2008) Yusuke Sato et al. NATURE
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