Classification of proteins with shared motifs and internal repeats in the ECOD database

HMMER web server: 2015 update

(2015) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Manual classification strategies in the ECOD database

(2015) Hua Cheng et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Crystal structure of the catalytic core of Rad2: insights into the mechanism of substrate binding

(2014) Michał Miętus et al.   NUCLEIC ACIDS RESEARCH

CDD: NCBI's conserved domain database

(2014) Aron Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

Analysis of the Protein Domain and Domain Architecture Content in Fungi and Its Application in the Search of New Antifungal Targets

(2014) Alejandro Barrera et al.   PLoS Computational Biology

ECOD: An Evolutionary Classification of Protein Domains

(2014) Hua Cheng et al.   PLoS Computational Biology

Quantification and functional analysis of modular protein evolution in a dense phylogenetic tree

(2013) Andrew D. Moore et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

β-Propeller Blades as Ancestral Peptides in Protein Evolution

(2013) Klaus O. Kopec et al.   PLoS One

Human Flap Endonuclease Structures, DNA Double-Base Flipping, and a Unified Understanding of the FEN1 Superfamily

(2011) Susan E. Tsutakawa et al.   CELL

Tandem repeats in proteins: From sequence to structure

(2011) Andrey V. Kajava   JOURNAL OF STRUCTURAL BIOLOGY

Substrate recognition and catalysis by flap endonucleases and related enzymes

(2010) Christopher G. Tomlinson et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Dioxygen Activation for the Self-Degradation of Heme: Reaction Mechanism and Regulation of Heme Oxygenase

(2010) Toshitaka Matsui et al.   INORGANIC CHEMISTRY

PROMOTIF-A program to identify and analyze structural motifs in proteins

(2010) E. Gail Hutchinson et al.   PROTEIN SCIENCE

Genomic and structural aspects of protein evolution

(2009) Cyrus Chothia et al.   BIOCHEMICAL JOURNAL

A Database of Domain Definitions for Proteins with Complex Interdomain Geometry

(2009) Indraneel Majumdar et al.   PLoS One

Cradle-loop barrels and the concept of metafolds in protein classification by natural descent

(2008) Vikram Alva et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Evolution of the β-propeller fold

(2007) Indronil Chaudhuri et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS