Vikodak - A Modular Framework for Inferring Functional Potential of Microbial Communities from 16S Metagenomic Datasets

Tax4Fun: predicting functional profiles from metagenomic 16S rRNA data: Fig. 1.

(2015) Kathrin P. Aßhauer et al.   BIOINFORMATICS

Gut Microbiomes of Indian Children of Varying Nutritional Status

(2014) Tarini Shankar Ghosh et al.   PLoS One

The vaginal microbiota of pregnant women who subsequently have spontaneous preterm labor and delivery and those with a normal delivery at term

(2014) Roberto Romero et al.   Microbiome

Respiratory tract clinical sample selection for microbiota analysis in patients with pulmonary tuberculosis

(2014) Luz Botero et al.   Microbiome

A gut microbiota-targeted dietary intervention for amelioration of chronic inflammation underlying metabolic syndrome

(2013) Shuiming Xiao et al.   FEMS MICROBIOLOGY ECOLOGY

Effect of non-surgical periodontal treatment on short chain fatty acid levels in gingival crevicular fluid of patients with generalized aggressive periodontitis

(2013) R. Lu et al.   JOURNAL OF PERIODONTAL RESEARCH

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

PATRIC, the bacterial bioinformatics database and analysis resource

(2013) Alice R. Wattam et al.   NUCLEIC ACIDS RESEARCH

Community differentiation of the cutaneous microbiota in psoriasis

(2013) Alexander V Alekseyenko et al.   Microbiome

A proteomic investigation of Fusobacterium nucleatum alkaline-induced biofilms

(2012) Jactty Chew et al.   BMC MICROBIOLOGY

Complex sputum microbial composition in patients with pulmonary tuberculosis

(2012) Zelin Cui et al.   BMC MICROBIOLOGY

TWARIT: An extremely rapid and efficient approach for phylogenetic classification of metagenomic sequences

(2012) Rachamalla Maheedhar Reddy et al.   GENE

C16S — A Hidden Markov Model based algorithm for taxonomic classification of 16S rRNA gene sequences

(2012) Tarini Shankar Ghosh et al.   GENOMICS

MetaSAMS—A novel software platform for taxonomic classification, functional annotation and comparative analysis of metagenome datasets

(2012) Martha Zakrzewski et al.   JOURNAL OF BIOTECHNOLOGY

Prevalence of β-lactamase-producing bacteria in human periodontitis

(2012) T. E. Rams et al.   JOURNAL OF PERIODONTAL RESEARCH

Structure, function and diversity of the healthy human microbiome

(2012)   NATURE

METAGENassist: a comprehensive web server for comparative metagenomics

(2012) D. Arndt et al.   NUCLEIC ACIDS RESEARCH

INDUS - a composition-based approach for rapid and accurate taxonomic classification of metagenomic sequences

(2011) Monzoorul Mohammed et al.   BMC GENOMICS

Distinct and complex bacterial profiles in human periodontitis and health revealed by 16S pyrosequencing

(2011) Ann L Griffen et al.   ISME Journal

Enterotypes of the human gut microbiome

(2011) Manimozhiyan Arumugam et al.   NATURE

IMG: the integrated microbial genomes database and comparative analysis system

(2011) V. M. Markowitz et al.   NUCLEIC ACIDS RESEARCH

Diet Drives Convergence in Gut Microbiome Functions Across Mammalian Phylogeny and Within Humans

(2011) B. D. Muegge et al.   SCIENCE

SPHINX—an algorithm for taxonomic binning of metagenomic sequences

(2010) Monzoorul Haque Mohammed et al.   BIOINFORMATICS

Identifying biologically relevant differences between metagenomic communities

(2010) Donovan H. Parks et al.   BIOINFORMATICS

The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes

(2008) F Meyer et al.   BMC BIOINFORMATICS