Identification of Non-Coding RNAs in the Candida parapsilosis Species Group

The Genomic Aftermath of Hybridization in the Opportunistic Pathogen Candida metapsilosis

(2015) Leszek P. Pryszcz et al.   PLoS Genetics

Skewer: a fast and accurate adapter trimmer for next-generation sequencing paired-end reads

(2014) Hongshan Jiang et al.   BMC BIOINFORMATICS

Rfam 12.0: updates to the RNA families database

(2014) Eric P. Nawrocki et al.   NUCLEIC ACIDS RESEARCH

Conservation and divergence of transcriptional coregulations between box C/D snoRNA and ribosomal protein genes inAscomycota

(2014) Li-Ting Diao et al.   RNA

Robust Identification of Noncoding RNA from Transcriptomes Requires Phylogenetically-Informed Sampling

(2014) Stinus Lindgreen et al.   PLoS Computational Biology

Comparative Phenotypic Analysis of the Major Fungal Pathogens Candida parapsilosis and Candida albicans

(2014) Linda M. Holland et al.   PLoS Pathogens

Infernal 1.1: 100-fold faster RNA homology searches

(2013) E. P. Nawrocki et al.   BIOINFORMATICS

Comparative Genome Analysis and Gene Finding in Candida Species Using CGOB

(2013) Sarah L. Maguire et al.   MOLECULAR BIOLOGY AND EVOLUTION

Candida parapsilosis Is a Significant Neonatal Pathogen

(2013) Mohan Pammi et al.   PEDIATRIC INFECTIOUS DISEASE JOURNAL

Splicing-Related Features of Introns Serve to Propel Evolution

(2013) Yuping Luo et al.   PLoS One

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure

(2013) Dale Muzzey et al.   GENOME BIOLOGY

Analysis of gene evolution and metabolic pathways using the Candida Gene Order Browser

(2012) David A Fitzpatrick et al.   BMC GENOMICS

Transcription of Two Long Noncoding RNAs Mediates Mating-Type Control of Gametogenesis in Budding Yeast

(2012) Folkert J. van Werven et al.   CELL

Sequence and Analysis of the Genome of the Pathogenic Yeast Candida orthopsilosis

(2012) Alessandro Riccombeni et al.   PLoS One

Hidden Killers: Human Fungal Infections

(2012) G. D. Brown et al.   Science Translational Medicine

Using RNA-seq to determine the transcriptional landscape and the hypoxic response of the pathogenic yeast Candida parapsilosis

(2011) Alessandro Guida et al.   BMC GENOMICS

The genetic code of the fungal CTG clade

(2011) Manuel A.S. Santos et al.   COMPTES RENDUS BIOLOGIES

The Candida genome database incorporates multiple Candida species: multispecies search and analysis tools with curated gene and protein information for Candida albicans and Candida glabrata

(2011) D. O. Inglis et al.   NUCLEIC ACIDS RESEARCH

Saccharomyces Genome Database: the genomics resource of budding yeast

(2011) J. M. Cherry et al.   NUCLEIC ACIDS RESEARCH

Comparative genomics of xylose-fermenting fungi for enhanced biofuel production

(2011) Dana J. Wohlbach et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Regulation of the Hypoxic Response in Candida albicans

(2010) John M. Synnott et al.   EUKARYOTIC CELL

Conserved and variable domains of RNase MRP RNA

(2010) Marcela Dávila López et al.   RNA Biology

Kinship in the SRP RNA family

(2010) Magnus Alm Rosenblad et al.   RNA Biology

Evolution of Yeast Noncoding RNAs Reveals an Alternative Mechanism for Widespread Intron Loss

(2010) Q. M. Mitrovich et al.   SCIENCE

Experimental annotation of the human pathogen Candida albicans coding and noncoding transcribed regions using high-resolution tiling arrays

(2010) Adnane Sellam et al.   GENOME BIOLOGY

SnoRNAs from the filamentous fungus Neurospora crassa: structural, functional and evolutionary insights

(2009) Na Liu et al.   BMC GENOMICS

Comparative genomics of the fungal pathogens Candida dubliniensis and Candida albicans

(2009) A. P. Jackson et al.   GENOME RESEARCH

JBrowse: A next-generation genome browser

(2009) M. E. Skinner et al.   GENOME RESEARCH

Eukaryotic snoRNAs: A paradigm for gene expression flexibility

(2009) Giorgio Dieci et al.   GENOMICS

Evolution of pathogenicity and sexual reproduction in eight Candida genomes

(2009) Geraldine Butler et al.   NATURE

Candida parapsilosis, an Emerging Fungal Pathogen

(2008) D. Trofa et al.   CLINICAL MICROBIOLOGY REVIEWS