Deciphering Transcriptome and Complex Alternative Splicing Transcripts in Mammary Gland Tissues from Cows Naturally Infected with Staphylococcus aureus Mastitis

Complement activation, regulation, and molecular basis for complement-related diseases

(2015) G. Bajic et al.   EMBO JOURNAL

Genetic mutations potentially cause two novel NCF1 splice variants up-regulated in the mammary gland, blood and neutrophil of cows infected by Escherichia coli

(2015) Zijing Zhang et al.   MICROBIOLOGICAL RESEARCH

Induced transcription and stability of CELF2 mRNA drives widespread alternative splicing during T-cell signaling

(2015) Michael J. Mallory et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Genome-Wide Association Study for Clinical Mastitis in First Parity US Holstein Cows Using Single-Step Approach and Genomic Matrix Re-Weighting Procedure

(2015) Francesco Tiezzi et al.   PLoS One

iTRAQ-proteomics and bioinformatics analyses of mammary tissue from cows with clinical mastitis due to natural infection with Staphylococci aureus

(2014) Jinming Huang et al.   BMC GENOMICS

A SNP in intron 8 of CD46 causes a novel transcript associated with mastitis in Holsteins

(2014) Xiuge Wang et al.   BMC GENOMICS

Associations between CXCR1 polymorphisms and pathogen-specific incidence rate of clinical mastitis, test-day somatic cell count, and test-day milk yield

(2014) Joren Verbeke et al.   JOURNAL OF DAIRY SCIENCE

Characterization of Transcriptional Complexity during Adipose Tissue Development in Bovines of Different Ages and Sexes

(2014) Yang Zhou et al.   PLoS One

Bovine Mastitis: Frontiers in Immunogenetics

(2014) Kathleen Thompson-Crispi et al.   Frontiers in Immunology

Parity-dependent association between TNF-α and LTF gene polymorphisms and clinical mastitis in dairy cattle

(2013) Katarzyna Wojdak-Maksymiec et al.   BMC Veterinary Research

Multiple promoters and targeted microRNAs direct the expressions ofHMGB3gene transcripts in dairy cattle

(2012) Liming Li et al.   ANIMAL GENETICS

Immune Response to Seasonal Influenza A Virus Infection: A Proteomic Approach

(2012) Luis M. Teran et al.   ARCHIVES OF MEDICAL RESEARCH

RNA-Seq analysis uncovers transcriptomic variations between morphologically similar in vivo- and in vitro-derived bovine blastocysts

(2012) Ashley M Driver et al.   BMC GENOMICS

The exon 29 c.3535A>T in the alpha-2-macroglobulin gene causing aberrant splice variants is associated with mastitis in dairy cattle

(2012) Xiuge Wang et al.   IMMUNOGENETICS

Effects of lactation and pregnancy on gene expression of endometrium of Holstein cows at day 17 of the estrous cycle or pregnancy

(2012) R.L.A. Cerri et al.   JOURNAL OF DAIRY SCIENCE

Evolutionary Dynamics of Gene and Isoform Regulation in Mammalian Tissues

(2012) J. Merkin et al.   SCIENCE

Quantitative trait loci for clinical mastitis on chromosomes 2, 6, 14 and 20 in Norwegian Red cattle

(2011) M. Sodeland et al.   ANIMAL GENETICS

Identification of novel transcripts in annotated genomes using RNA-Seq

(2011) A. Roberts et al.   BIOINFORMATICS

Transcriptomic analysis of milk somatic cells in mastitis resistant and susceptible sheep upon challenge with Staphylococcus epidermidis and Staphylococcus aureus

(2011) Cécile MD Bonnefont et al.   BMC GENOMICS

A critical role for FcgammaRIIB in up-regulation of Fas ligand induced by a microbial polysaccharide

(2011) M. Piccioni et al.   CLINICAL AND EXPERIMENTAL IMMUNOLOGY

Identification of Splice Variants, Targeted MicroRNAs and Functional Single Nucleotide Polymorphisms of the BOLA-DQA2 Gene in Dairy Cattle

(2011) Qinlei Hou et al.   DNA AND CELL BIOLOGY

Two splice variants of the bovine lactoferrin gene identified in Staphylococcus aureus isolated from mastitis in dairy cattle

(2011) J.M. Huang et al.   GENETICS AND MOLECULAR RESEARCH

Toll-like receptor 2-mediated innate immune response in human nonparenchymal liver cells toward adeno-associated viral vectors

(2011) Marianna Hösel et al.   HEPATOLOGY

SOAPsplice: Genome-Wide ab initio Detection of Splice Junctions from RNA-Seq Data

(2011) Songbo Huang et al.   Frontiers in Genetics

Comparative Kinetics ofEscherichia coli- andStaphylococcus aureus-Specific Activation of Key Immune Pathways in Mammary Epithelial Cells Demonstrates ThatS. aureusElicits a Delayed Response Dominated by Interleukin-6 (IL-6) but Not by IL-1A or Tumor Necrosis Factor Alpha

(2010) Juliane Günther et al.   INFECTION AND IMMUNITY

CD4+ T Cells Elicit Host Immune Responses to MHC Class II- Ovarian Cancer through CCL5 Secretion and CD40-Mediated Licensing of Dendritic Cells

(2010) Y. C. Nesbeth et al.   JOURNAL OF IMMUNOLOGY

Adaptation genomics: the next generation

(2010) Jessica Stapley et al.   TRENDS IN ECOLOGY & EVOLUTION

SOAP2: an improved ultrafast tool for short read alignment

(2009) R. Li et al.   BIOINFORMATICS

Shedding light on DARC: the role of the Duffy antigen/receptor for chemokines in inflammation, infection and malignancy

(2009) K. Horne et al.   INFLAMMATION RESEARCH

Mfge8 diminishes the severity of tissue fibrosis in mice by binding and targeting collagen for uptake by macrophages

(2009) Kamran Atabai et al.   JOURNAL OF CLINICAL INVESTIGATION

Negative regulation of TLR4 via targeting of the proinflammatory tumor suppressor PDCD4 by the microRNA miR-21

(2009) Frederick J Sheedy et al.   NATURE IMMUNOLOGY

Next-Generation DNA Sequencing Methods

(2008) Elaine R. Mardis   Annual Review of Genomics and Human Genetics

Functional characterization of bovine TIRAP and MyD88 in mediating bacterial lipopolysaccharide-induced endothelial NF-κB activation and apoptosis

(2008) Elizabeth A. Cates et al.   COMPARATIVE IMMUNOLOGY MICROBIOLOGY AND INFECTIOUS DISEASES

The Cost of Generic Clinical Mastitis in Dairy Cows as Estimated by Using Dynamic Programming

(2008) D. Bar et al.   JOURNAL OF DAIRY SCIENCE

Alternative isoform regulation in human tissue transcriptomes

(2008) Eric T. Wang et al.   NATURE

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS