Evolution of the Tetrapyrrole Biosynthetic Pathway in Secondary Algae: Conservation, Redundancy and Replacement

Untangling the early diversification of eukaryotes: a phylogenomic study of the evolutionary origins of Centrohelida, Haptophyta and Cryptista

(2016) Fabien Burki et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Protein Import and the Origin of Red Complex Plastids

(2015) Sven B. Gould et al.   CURRENT BIOLOGY

Genomic perspectives on the birth and spread of plastids: Fig. 1.

(2015) John M. Archibald   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Factors mediating plastid dependency and the origins of parasitism in apicomplexans and their close relatives

(2015) Jan Janouškovec et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Updating algal evolutionary relationships through plastid genome sequencing: did alveolate plastids emerge through endosymbiosis of an ochrophyte?

(2015) Tereza Ševčíková et al.   Scientific Reports

Endosymbiotic theory for organelle origins

(2014) Verena Zimorski et al.   CURRENT OPINION IN MICROBIOLOGY

Horizontal Gene Transfer and Redundancy of Tryptophan Biosynthetic Enzymes in Dinotoms

(2014) Behzad Imanian et al.   Genome Biology and Evolution

Evidence for the Retention of Two Evolutionary Distinct Plastids in Dinoflagellates with Diatom Endosymbionts

(2014) Elisabeth Hehenberger et al.   Genome Biology and Evolution

Chromera velia, Endosymbioses and the Rhodoplex Hypothesis—Plastid Evolution in Cryptophytes, Alveolates, Stramenopiles, and Haptophytes (CASH Lineages)

(2014) Jörn Petersen et al.   Genome Biology and Evolution

Origin and Evolution of Plastids and Photosynthesis in Eukaryotes

(2014) G. I. McFadden   Cold Spring Harbor Perspectives in Biology

What Was the Real Contribution of Endosymbionts to the Eukaryotic Nucleus? Insights from Photosynthetic Eukaryotes

(2014) D. Moreira et al.   Cold Spring Harbor Perspectives in Biology

The evolution of photosynthesis in chromist algae through serial endosymbioses

(2014) John W. Stiller et al.   Nature Communications

Palpitomonas bilix represents a basal cryptist lineage: insight into the character evolution in Cryptista

(2014) Akinori Yabuki et al.   Scientific Reports

The Number, Speed, and Impact of Plastid Endosymbioses in Eukaryotic Evolution

(2013) Patrick J. Keeling   Annual Review of Plant Biology

Endosymbiotic Gene Transfer in Tertiary Plastid-Containing Dinoflagellates

(2013) Fabien Burki et al.   EUKARYOTIC CELL

Phylogenomics demonstrates that breviate flagellates are related to opisthokonts and apusomonads

(2013) M. W. Brown et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The rice mitochondria proteome and its response during development and to the environment

(2013) Shaobai Huang et al.   Frontiers in Plant Science

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

Morphostasis in a novel eukaryote illuminates the evolutionary transition from phagotrophy to phototrophy: description of Rapaza viridis n. gen. et sp. (Euglenozoa, Euglenida)

(2012) Aika Yamaguchi et al.   BMC EVOLUTIONARY BIOLOGY

Genome-Based Reconstruction of the Protein Import Machinery in the Secondary Plastid of a Chlorarachniophyte Alga

(2012) Yoshihisa Hirakawa et al.   EUKARYOTIC CELL

Re-evaluating the Green versus Red Signal in Eukaryotes with Secondary Plastid of Red Algal Origin

(2012) Fabien Burki et al.   Genome Biology and Evolution

Reevaluating the Green Contribution to Diatom Genomes

(2012) Philippe Deschamps et al.   Genome Biology and Evolution

Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs

(2012) Bruce A. Curtis et al.   NATURE

Emerging facets of plastid division regulation

(2012) Indranil Basak et al.   PLANTA

The Plastid Genome of Eutreptiella Provides a Window into the Process of Secondary Endosymbiosis of Plastid in Euglenids

(2012) Štěpánka Hrdá et al.   PLoS One

Aerobic kinetoplastid flagellate Phytomonas does not require heme for viability

(2012) L. Koreny et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The evolutionary history of haptophytes and cryptophytes: phylogenomic evidence for separate origins

(2012) F. Burki et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

(2012) Ruibang Luo et al.   GigaScience

Do Red and Green Make Brown?: Perspectives on Plastid Acquisitions within Chromalveolates

(2011) Richard G. Dorrell et al.   EUKARYOTIC CELL

Sequence Evidence for the Presence of Two Tetrapyrrole Pathways in Euglena gracilis

(2011) Luděk Kořený et al.   Genome Biology and Evolution

Red and Problematic Green Phylogenetic Signals among Thousands of Nuclear Genes from the Photosynthetic and Apicomplexa-Related Chromera velia

(2011) Christian Woehle et al.   Genome Biology and Evolution

Correlation between Nuclear Plastid DNA Abundance and Plastid Number Supports the Limited Transfer Window Hypothesis

(2011) David Roy Smith et al.   Genome Biology and Evolution

The search for the missing link: A relic plastid in Perkinsus?

(2011) José A. Fernández Robledo et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Tetrapyrrole Synthesis of Photosynthetic Chromerids Is Likely Homologous to the Unusual Pathway of Apicomplexan Parasites

(2011) Luděk Kořený et al.   PLANT CELL

Estimating the timing of early eukaryotic diversification with multigene molecular clocks

(2011) L. W. Parfrey et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

ERAD Components in Organisms with Complex Red Plastids Suggest Recruitment of a Preexisting Protein Transport Pathway for the Periplastid Membrane

(2010) Gregor Felsner et al.   Genome Biology and Evolution

The endosymbiotic origin, diversification and fate of plastids

(2010) P. J. Keeling   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A common red algal origin of the apicomplexan, dinoflagellate, and heterokont plastids

(2010) J. Janouskovec et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Acquired phototrophy in aquatic protists

(2009) DK Stoecker et al.   AQUATIC MICROBIAL ECOLOGY

Evolution of the haem synthetic pathway in kinetoplastid flagellates: An essential pathway that is not essential after all?

(2009) Luděk Kořený et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building

(2009) M. Gouy et al.   MOLECULAR BIOLOGY AND EVOLUTION

Mitochondrial and plastid evolution in eukaryotes: an outsiders' perspective

(2009) Jeferson Gross et al.   NATURE REVIEWS GENETICS

Phylogenomic analyses support the monophyly of Excavata and resolve relationships among eukaryotic "supergroups"

(2009) V. Hampl et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomic Footprints of a Cryptic Plastid Endosymbiosis in Diatoms

(2009) A. Moustafa et al.   SCIENCE

Chromalveolate plastids: direct descent or multiple endosymbioses?

(2009) Andrzej Bodył et al.   TRENDS IN ECOLOGY & EVOLUTION

Plastid Evolution

(2008) Sven B. Gould et al.   Annual Review of Plant Biology

Chromatophore Genome Sequence of Paulinella Sheds Light on Acquisition of Photosynthesis by Eukaryotes

(2008) Eva C.M. Nowack et al.   CURRENT BIOLOGY

A HYPOTHESIS FOR PLASTID EVOLUTION IN CHROMALVEOLATES1

(2008) M. Virginia Sanchez-Puerta et al.   JOURNAL OF PHYCOLOGY

Genes of Cyanobacterial Origin in Plant Nuclear Genomes Point to a Heterocyst-Forming Plastid Ancestor

(2008) O. Deusch et al.   MOLECULAR BIOLOGY AND EVOLUTION

The eukaryotic tree of life: endosymbiosis takes its TOL

(2008) Christopher E. Lane et al.   TRENDS IN ECOLOGY & EVOLUTION

Origins of plastids and glyceraldehyde-3-phosphate dehydrogenase genes in the green-colored dinoflagellate Lepidodinium chlorophorum

(2007) Kiyotaka Takishita et al.   GENE