Computational Analysis of G-Quadruplex Forming Sequences across Chromosomes Reveals High Density Patterns Near the Terminal Ends
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Title
Computational Analysis of G-Quadruplex Forming Sequences across Chromosomes Reveals High Density Patterns Near the Terminal Ends
Authors
Keywords
DNA-binding proteins, Guanine, Sequence motif analysis, Sequence assembly tools, Chromosomes, Chromosome structure and function, DNA sequence analysis, Repeated sequences
Journal
PLoS One
Volume 11, Issue 10, Pages e0165101
Publisher
Public Library of Science (PLoS)
Online
2016-10-25
DOI
10.1371/journal.pone.0165101
References
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Note: Only part of the references are listed.- G-Quadruplexes Involving Both Strands of Genomic DNA Are Highly Abundant and Colocalize with Functional Sites in the Human Genome
- (2016) Andrzej S Kudlicki PLoS One
- Ensembl regulation resources
- (2016) Daniel R. Zerbino et al. Database-The Journal of Biological Databases and Curation
- High-throughput sequencing of DNA G-quadruplex structures in the human genome
- (2015) Vicki S Chambers et al. NATURE BIOTECHNOLOGY
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- (2015) Yang Zhang et al. RNA Biology
- G-quadruplex formation enhances splicing efficiency of PAX9 intron 1
- (2014) Mariana Martins Ribeiro et al. HUMAN GENETICS
- DNA and RNA Quadruplex-Binding Proteins
- (2014) Václav Brázda et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Identification and characterization of RNA guanine-quadruplex binding proteins
- (2014) Annekathrin von Hacht et al. NUCLEIC ACIDS RESEARCH
- The UCSC Genome Browser database: 2015 update
- (2014) Kate R. Rosenbloom et al. NUCLEIC ACIDS RESEARCH
- G-quadruplex formation in telomeres enhances POT1/TPP1 protection against RPA binding
- (2014) S. Ray et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Exploring mRNA 3′-UTR G-quadruplexes: evidence of roles in both alternative polyadenylation and mRNA shortening
- (2013) Jean-Denis Beaudoin et al. NUCLEIC ACIDS RESEARCH
- A G-Rich element forms a G-quadruplex and regulates BACE1 mRNA alternative splicing
- (2012) Jean-François Fisette et al. JOURNAL OF NEUROCHEMISTRY
- DNA secondary structures: stability and function of G-quadruplex structures
- (2012) Matthew L. Bochman et al. NATURE REVIEWS GENETICS
- 5'-UTR RNA G-quadruplexes: translation regulation and targeting
- (2012) A. Bugaut et al. NUCLEIC ACIDS RESEARCH
- G–quadruplex RNA structure as a signal for neurite mRNA targeting
- (2011) Murugan Subramanian et al. EMBO REPORTS
- Yin Yang 1 contains G-quadruplex structures in its promoter and 5′-UTR and its expression is modulated by G4 resolvase 1
- (2011) Weiwei Huang et al. NUCLEIC ACIDS RESEARCH
- G-quadruplex structures in TP53 intron 3: role in alternative splicing and in production of p53 mRNA isoforms
- (2010) Virginie Marcel et al. CARCINOGENESIS
- 5'-UTR G-quadruplex structures acting as translational repressors
- (2010) J.-D. Beaudoin et al. NUCLEIC ACIDS RESEARCH
- Circos: An information aesthetic for comparative genomics
- (2009) M. Krzywinski et al. GENOME RESEARCH
- Identification of chromosome sequence motifs that mediate meiotic pairing and synapsis in C. elegans
- (2009) Carolyn M. Phillips et al. NATURE CELL BIOLOGY
- Homologue pairing: getting it right
- (2009) R. Scott Hawley et al. NATURE CELL BIOLOGY
- A novel G-quadruplex-forming GGA repeat region in the c-myb promoter is a critical regulator of promoter activity
- (2008) SunMi L. Palumbo et al. NUCLEIC ACIDS RESEARCH
- The G-quartet containing FMRP binding site in FMR1 mRNA is a potent exonic splicing enhancer
- (2008) Marie-Cécile Didiot et al. NUCLEIC ACIDS RESEARCH
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