Article
Microbiology
Zhenhe Su, Xiaomeng Liu, Qinggang Guo, Lifeng Xuan, Xiuyun Lu, Lihong Dong, Xiaoyun Zhang, Peipei Wang, Weisong Zhao, Yuanhang Qu, Shezeng Li, Ping Ma
Summary: In this study, the pathogenicity of two pectinolytic strains of Pectobacterium spp. (P. brasiliense and P. carotovorum) was investigated. The results showed that P. carotovorum had higher cell wall-degrading enzyme activities and caused more severe disease symptoms in potato tubers compared to P. brasiliense. The pathogenicity of both strains increased with temperature. Furthermore, coinoculation of P. carotovorum with P. brasiliense resulted in more severe pathogenicity, especially when P. carotovorum had a bacterial number advantage at the beginning. These findings provide new insights into the pathogenicity caused by mixed infections of different Pectobacterium spp.
MICROBIOLOGICAL RESEARCH
(2022)
Article
Agronomy
Viola Kurm, Odette Mendes, Jack Gros, Jan van der Wolf
Summary: This study investigated whether potato seed lots of the same cultivar from different fields, inoculated with the same density of Soft rot Pectobacteriaceae (SRP) and planted in the same field, showed differences in blackleg disease incidence, and if these differences were correlated with the microbial community composition in tuber and the soil where the mother tubers were grown. It was found that tubers from seed lots with a high disease incidence had a different microbial community composition than those from seed lots with a low disease incidence.
EUROPEAN JOURNAL OF PLANT PATHOLOGY
(2023)
Article
Microbiology
Rebecca D. Curland, Amanda Mainello, Keith L. Perry, Jianjun Hao, Amy O. Charkowski, Carolee T. Bull, Ryan R. McNally, Steven B. Johnson, Noah Rosenzweig, Gary A. Secor, Robert P. Larkin, Beth K. Gugino, Carol A. Ishimaru
Summary: An outbreak of bacterial soft rot and blackleg of potato has been occurring in the northeastern region of the United States since 2014. A phylogenetic study was conducted to identify the pathogens involved in the epidemic, revealing a variety of species clustering with certain type strains. The study also found low genetic diversity in D. dianthicola strains and greater diversity in P. parmentieri strains among those isolated from symptomatic potato samples in 2015-2016.
Article
Microbiology
Jacques Pedron, Santiago Schaerer, Isabelle Kellenberger, Frederique Van Gijsegem
Summary: Potato blackleg and soft rot caused by Pectobacterium and Dickeya are devastating bacterial diseases globally. In Europe, Pectobacterium spp. were historically the main causative agents, but in Switzerland, there was a higher occurrence of Dickeya species, particularly in the 1980s. The genomic comparison of early D. solani isolates from the 1990s with strains from the 2000s outbreak in Europe showed minimal differences, suggesting no major changes in virulence genes over time.
Article
Microbiology
Theresa Harten, Rolf Nimzyk, Vivian E. A. Gawlick, Barbara Reinhold-Hurek
Summary: In this study, a global genomic screen was performed on Azoarcus olearius to identify putatively essential genes using Tn5 transposon mutagenesis and high-throughput sequencing. The results identified genes essential for growth on rich medium and revealed the impact of certain genes on bacterial competitiveness in pure culture.
MICROBIOLOGY SPECTRUM
(2022)
Article
Agronomy
Djamila Marok-Alim, Mohamed Amine Marok, Zoulikha Krimi
Summary: Pectinolytic bacteria were isolated from potato plants and tubers showing blackleg and soft rot symptoms, collected from fields and storages in Ain Defla, Algeria. These bacteria induced hypersensitive reaction and soft rot symptoms in tobacco leaves and potato tuber slices, respectively. Molecular identification confirmed that four isolates belonged to the Dickeya solani species, which caused blackleg and soft rot on potato.
Article
Entomology
Nisrine Sbai Idrissi, Aicha Ouarzane, Latifa Elouazni, Aziz Hmyene, Said Elantri, Abdessamad Amine
Summary: A study in Morocco isolated 608 bacterial cultures from potato tubers and rhizosphere soils, with 40 showing antagonistic activity against Pectobacterium carotovorum. Among these, 10 isolates exhibited symptom suppression over 90%, with 8 showing complete soft rot suppression in in vivo tests. The selected strains, mainly Bacillus and Pseudomonas species, proved effective in suppressing blackleg and soft rot symptoms, suggesting their potential as biocontrol agents.
EGYPTIAN JOURNAL OF BIOLOGICAL PEST CONTROL
(2021)
Article
Agronomy
Robert Czajkowski
Summary: A simple and cost-effective method was developed to generate soft rot Pectobacteriaceae Tn5 mutants in genes encoding receptors used by phages, allowing the production of mutants with phage-resistant phenotypes within approximately 48 hours.
EUROPEAN JOURNAL OF PLANT PATHOLOGY
(2021)
Article
Biotechnology & Applied Microbiology
Mohamed Sahrul Tamzil, Yuzer Alfiko, Andhika Faisal Mubarok, Sigit Purwantomo, Antonius Suwanto, Sri Budiarti
Summary: This research successfully addressed the common issue of explant contamination caused by Agrobacterium overgrowth during plant transformation by constructing specific auxotrophic mutants. The effectiveness of these mutants in transferring T-DNA was found not significantly different from the wild type, indicating a promising approach to prevent Agrobacterium overgrowth.
BIOTECHNOLOGY AND BIOPROCESS ENGINEERING
(2021)
Article
Agronomy
E. Theron, K. N. Bophela, J. Bisschoff, G. Shin, T. A. Coutinho, J. E. van der Waals
Summary: Pectobacterium brasiliense (Pb) remains the dominant and most pathogenic species on potatoes in South Africa. Pectobacterium carotovorum (Pc), Pectobacterium parmentieri (Pm), and Pectobacterium versatile (Pv) were also identified, with Pv being reported for the first time. Dickeya solani was not detected in any of the samples.
Article
Horticulture
Habibeh Hajian-Maleki, Sareh Baghaee-Ravari, Mohammad Moghaddam
Summary: The study found that plant-derived compounds, specifically Myrtus communis and Ferula gummosa essential oils, showed strong antibacterial activity against Pectobacterium carotovorum subsp. carotovorum. The combination of the two essential oils also exhibited synergistic interactions against the pathogens.
SCIENTIA HORTICULTURAE
(2021)
Article
Biotechnology & Applied Microbiology
E. S. Nazareno, B. Acharya, C. K. Dumenyo
Summary: Researchers re-engineered a classic tool for mutagenesis and gene expression studies in Gram-negative bacteria, resulting in a modified Tn5-based transposon with multiple features for rapid mutant selection, direct gene expression quantification, and easy cloning of disrupted genes. The transposon enables positive antibiotic selection and reporter assays based on promoter activity, as well as transposition in recipient strains lacking the pir gene. Furthermore, the modified transposon can be delivered into recipient cells through biparental mating or electroporation for versatile applications.
LETTERS IN APPLIED MICROBIOLOGY
(2021)
Article
Biotechnology & Applied Microbiology
Gal Sason, Edouard Jurkevitch, Amos Nussinovitch
Summary: This research developed a kappa-carrageenan-based encapsulation system to release predators for preventing soft-rot infections. The encapsulated predators efficiently preyed on soft rot bacteria and had higher survival rates after drying.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
(2023)
Article
Agriculture, Multidisciplinary
Chong Wang, Xiaoyu Shi, Jiangang Liu, Jiongchao Zhao, Xiaozhi Bo, Fu Chen, Qingquan Chu
Summary: The study found that climate change has a potential impact on the distribution of potatoes in China, leading to a shrinking of climate suitable areas and expansion to the east while shrinking to the north. The consistency between major planting areas and high climate suitability areas decreased, and potato planting in low climate suitable areas may have adverse effects on production.
AGRICULTURE ECOSYSTEMS & ENVIRONMENT
(2021)
Article
Plant Sciences
M. Belen Suarez, Marta Diego, Francisco J. Feria, Manuel J. Martin-Robles, Sergio Moreno, Jose Luis Palomo
Summary: This study developed a new PCR assay to accurately identify the causal agent of potato soft rot disease, improving the specificity and accuracy of diagnosis.
Article
Biochemistry & Molecular Biology
Karolina Ossowska, Agata Motyka-Pomagruk, Natalia Kaczynska, Agnieszka Kowalczyk, Wojciech Sledz, Ewa Lojkowska, Zbigniew Kaczynski
Summary: Pectobacterium parmentieri is a plant pathogenic bacterium causing economic losses in cultivated plants. In this study, it was found that two P. parmentieri strains isolated from different countries have the same OPS structure. Analysis of genomic and phenotypic features revealed that certain strains have higher genome-wide similarity and better ability to macerate tissue.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2022)
Article
Multidisciplinary Sciences
Przemyslaw Bartnik, Kinga Lewtak, Marta Fiolka, Paulina Czaplewska, Magdalena Narajczyk, Robert Czajkowski
Summary: Resistance to bacteriophage infections in Dickeya solani comes at a cost, compromising its ability to grow and cause disease in potato plants.
SCIENTIFIC REPORTS
(2022)
Editorial Material
Microbiology
Zhiyong Li, Robert Czajkowski
FRONTIERS IN MICROBIOLOGY
(2022)
Article
Biochemical Research Methods
Marcin Borowicz, Dorota M. Krzyzanowska, Sylwia Jafra
Summary: The crystal violet-based assay, commonly used for studying early stages of bacterial biofilm formation, was modified to investigate biofilm formation in medical tubing. Our cost-effective method provided quantitative and qualitative distinctions, without the need for sophisticated equipment, in the ability of four bacterial strains to colonize PVC catheters.
JOURNAL OF MICROBIOLOGICAL METHODS
(2023)
Article
Cell Biology
Maria Szrejder, Marlena Typiak, Piotr Pikul, Irena Audzeyenka, Patrycja Rachubik, Dorota Rogacka, Magdalena Narajczyk, Agnieszka Piwkowska
Summary: Lactate has been found to be a fuel energy source and plays an essential role in podocyte metabolism. The study demonstrated the presence of lactate transporters in podocytes and observed changes in their amount in response to glucose availability. Lactate exposure preserved cell survival and prevented glycogen reserves depletion during glucose deprivation.
EUROPEAN JOURNAL OF CELL BIOLOGY
(2023)
Article
Multidisciplinary Sciences
Daryna Sokolova, Anna Smolarska, Przemyslaw Bartnik, Lukasz Rabalski, Maciej Kosinski, Magdalena Narajczyk, Dorota M. Krzyzanowska, Magdalena Rajewska, Inez Mruk, Paulina Czaplewska, Sylwia Jafra, Robert Czajkowski
Summary: This study identified two D. solani IPO 2222 mutants, DsR34 and DsR207, that showed reduced ability to macerate potato tuber tissues compared to the wildtype strain. Genome sequencing revealed altered genes encoding secretion protein HlyD and elongation factor Tu, which impacted the proteomes of the mutants.
SCIENTIFIC REPORTS
(2023)
Article
Multidisciplinary Sciences
Dorota M. Krzyzanowska, Magdalena Jablonska, Zbigniew Kaczynski, Malgorzata Czerwicka-Pach, Katarzyna Macur, Sylwia Jafra
Summary: Using RNAseq, we compared the transcriptomic responses of Pseudomonas donghuensis P482 to root exudates of tomato and maize. We found that tomato exudates specifically induced nitric oxide detoxification, repair of iron-sulfur clusters, respiration through the cyanide-insensitive cytochrome bd, and catabolism of amino and/or fatty acids. Maize exudates specifically induced the activity of the MexE RND-type efflux pump and copper tolerance. The shared response to exudates was influenced by compounds from the plants and their growth environment.
SCIENTIFIC REPORTS
(2023)
Article
Microbiology
Miroslawa Panasiuk, Milena Chraniuk, Karolina Zimmer, Lilit Hovhannisyan, Vasil Krapchev, Grazyna Peszynska-Sularz, Magdalena Narajczyk, Jan Weslawski, Agnieszka Konopacka, Beata Gromadzka
Summary: Chimeric virus-like particles (cVLPs) have the potential to improve public health as safe and effective vaccine candidates. Capsid proteins of caliciviruses can be genetically modified to present foreign epitopes on the surface of cVLPs, enhancing the immune response to low immunogenic antigens. The impact of epitope localization in different structural loops of the VP1 protein of norovirus (NoV) on immunogenicity was investigated using insect cells to produce cVLPs presenting influenza virus-conserved epitopes. The study compared the specific reaction to influenza epitopes in vaccinated mice to determine the impact of epitope localization on immunogenicity.
FRONTIERS IN MICROBIOLOGY
(2023)
Editorial Material
Plant Sciences
Robert Czajkowski, Mohammad Arif, Toni Chapman
FRONTIERS IN PLANT SCIENCE
(2023)
Article
Agronomy
Anissa Yahyaoui, Maroua Oueslati, Agata Motyka-Pomagruk, Natalia Kaczynska, Wojciech Sledz, Belhassen Tarhouni, Mohamed Rabeh Hajlaoui, Ewa Lojkowska, Najla Sadfi-Zouaoui
Summary: Soft rot disease in potato is a global problem, with Pectobacterium and Dickeya bacteria being the main culprits. However, this study reveals the involvement of pectinolytic Bacillus and Paenibacillus in soft rot diseases. Isolates collected from potato samples in Tunisia showed pectinolytic activity and the majority belonged to Bacillus pumilus species. This is the first report of soft rot in potato caused by pectinolytic B. pumilus in Tunisia.
Article
Chemistry, Analytical
Katarzyna Szot-Karpinska, Patryk Kudla, Urszula Orzel, Magdalena Narajczyk, Martin Jonsson-Niedziolka, Barbara Palys, Slawomir Filipek, Andreas Ebner, Joanna Niedziolka-Jonsson
Summary: This study investigates the interactions between C-reactive protein (CRP) and CRP-binding peptide materials, identifying the best binder as the P3 peptide. The P3 peptide is used for CRP recognition on electrodes, demonstrating its potential as a receptor for CRP.
ANALYTICAL CHEMISTRY
(2023)
Review
Biochemistry & Molecular Biology
Tomasz Maciag, Edmund Koziel, Piotr Rusin, Katarzyna Otulak-Koziel, Sylwia Jafra, Robert Czajkowski
Summary: Biological plant protection is a promising alternative to chemical methods for safeguarding plants against diseases, using biological control agents (BCAs) to suppress plant pathogens. While microbial BCAs have the potential to effectively manage crop diseases, there is a need for further research to improve their efficacy. Microbial consortia, consisting of multiple microorganisms with different mechanisms of action, offer promise in enhancing the overall antipathogen effect. This article aims to present an analysis of the current status of microbial consortia-based biocontrol and explore future research directions for biological plant protection.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2023)
Article
Physiology
Alicja Braczko, Gabriela Harasim, Ada Kawecka, Iga Walczak, Malgorzata Kapusta, Magdalena Narajczyk, Klaudia Stawarska, Ryszard T. Smolenski, Barbara Kutryb-Zajac
Summary: This study analyzed the effects of atorvastatin and synthetic peptide PCSK9i on the bioenergetics and function of microvascular endothelial cells and cardiomyocytes. The results showed that PCSK9i had superior effects compared to atorvastatin.
FRONTIERS IN PHYSIOLOGY
(2023)
Article
Microbiology
Marcin Borowicz, Dorota M. Krzyzanowska, Magdalena Narajczyk, Marta Sobolewska, Magdalena Rajewska, Paulina Czaplewska, Katarzyna Wegrzyn, Robert Czajkowski
Summary: Tailocins are nanomolecular machines produced by bacteria with bactericidal activity. In this study, a new tailocin produced by the plant pathogenic bacterium Dickeya dadantii was characterized. The tailocins showed resistance to pH, temperature, and high osmolarity, and had bactericidal activity against certain strains, but were not toxic to other bacteria and nematodes.
FRONTIERS IN MICROBIOLOGY
(2023)
Article
Chemistry, Analytical
Katarzyna Szot-Karpinska, Patryk Kudla, Urszula Orzel, Magdalena Narajczyk, Martin Jonsson-Niedziolka, Barbara Palys, Slawomir Filipek, Andreas Ebner, Joanna Niedziolka-Jonsson
Summary: This study investigates the interactions between C-reactive protein (CRP) and new CRP-binding peptide materials using experimental methods and theoretical simulations. Three specific CRP-binding peptides were identified and their binding efficiency towards CRP was demonstrated. The study consistently showed that the P3 peptide is the best CRP binder. The study also presents a potential candidate peptide, P3, as a receptor for CRP.
ANALYTICAL CHEMISTRY
(2023)