Inter-varietal structural variation in grapevine genomes

Transcriptome profiling of grapevine seedless segregants during berry development reveals candidate genes associated with berry weight

(2016) Claudia Muñoz-Espinoza et al.   BMC PLANT BIOLOGY

Whole genome comparison between table and wine grapes reveals a comprehensive catalog of structural variants

(2014) Alex Di Genova et al.   BMC PLANT BIOLOGY

Structural variation and genome complexity: is dispensable really dispensable?

(2014) Fabio Marroni et al.   CURRENT OPINION IN PLANT BIOLOGY

Plasticity and Evolution of (+)-3-Carene Synthase and (−)-Sabinene Synthase Functions of a Sitka Spruce Monoterpene Synthase Gene Family Associated with Weevil Resistance

(2014) Christopher R. Roach et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Gibberellin Application at Pre-Bloom in Grapevines Down-Regulates the Expressions of VvIAA9 and VvARF7, Negative Regulators of Fruit Set Initiation, during Parthenocarpic Fruit Development

(2014) Chan Jin Jung et al.   PLoS One

Comparative analysis of the domestic cat genome reveals genetic signatures underlying feline biology and domestication

(2014) Michael J. Montague et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome Sequencing Highlights the Dynamic Early History of Dogs

(2014) Adam H. Freedman et al.   PLoS Genetics

Annotated features of domestic cat – Felis catus genome

(2014) Gaik Tamazian et al.   GigaScience

New stable QTLs for berry weight do not colocalize with QTLs for seed traits in cultivated grapevine (Vitis vinifera L.)

(2013) Agnès Doligez et al.   BMC PLANT BIOLOGY

Heterosis in elite hybrid rice: speculation on the genetic and biochemical mechanisms

(2013) Stephen A Goff et al.   CURRENT OPINION IN PLANT BIOLOGY

Great ape genetic diversity and population history

(2013) Javier Prado-Martinez et al.   NATURE

Biosynthesis of sesquiterpenes in grape berry exocarp of Vitis vinifera L.: Evidence for a transport of farnesyl diphosphate precursors from plastids to the cytosol

(2013) Bianca May et al.   PHYTOCHEMISTRY

Genome-Wide Analysis of the Expansin Gene Superfamily Reveals Grapevine-Specific Structural and Functional Characteristics

(2013) Silvia Dal Santo et al.   PLoS One

Copy number polymorphism in plant genomes

(2013) Agnieszka Żmieńko et al.   THEORETICAL AND APPLIED GENETICS

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

Copy number variation of individual cattle genomes using next-generation sequencing

(2012) D. M. Bickhart et al.   GENOME RESEARCH

Genome-Wide Identification and Evolutionary Analysis ofArabidopsisSm Genes Family

(2012) Jun Cao et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

Insights into hominid evolution from the gorilla genome sequence

(2012) Aylwyn Scally et al.   NATURE

Maize HapMap2 identifies extant variation from a genome in flux

(2012) Jer-Ming Chia et al.   NATURE GENETICS

Pivotal role of the AREB/ABF-SnRK2 pathway in ABRE-mediated transcription in response to osmotic stress in plants

(2012) Yasunari Fujita et al.   PHYSIOLOGIA PLANTARUM

The Grapevine Expression Atlas Reveals a Deep Transcriptome Shift Driving the Entire Plant into a Maturation Program

(2012) M. Fasoli et al.   PLANT CELL

Structural Variants in the Soybean Genome Localize to Clusters of Biotic Stress-Response Genes

(2012) L. K. McHale et al.   PLANT PHYSIOLOGY

Deconstruction of the (Paleo)Polyploid Grapevine Genome Based on the Analysis of Transposition Events Involving NBS Resistance Genes

(2012) Giulia Malacarne et al.   PLoS One

Genomic characteristics of cattle copy number variations

(2011) Yali Hou et al.   BMC GENOMICS

Analysis of high-identity segmental duplications in the grapevine genome

(2011) Giuliana Giannuzzi et al.   BMC GENOMICS

Detection of copy number variations in rice using array-based comparative genomic hybridization

(2011) Ping Yu et al.   BMC GENOMICS

Gorilla genome structural variation reveals evolutionary parallelisms with chimpanzee

(2011) M. Ventura et al.   GENOME RESEARCH

Functional effect of grapevine 1-deoxy-D-xylulose 5-phosphate synthase substitution K284N on Muscat flavour formation

(2011) Juri Battilana et al.   JOURNAL OF EXPERIMENTAL BOTANY

Mapping copy number variation by population-scale genome sequencing

(2011) Ryan E. Mills et al.   NATURE

Whole-genome sequencing of multiple Arabidopsis thaliana populations

(2011) Jun Cao et al.   NATURE GENETICS

Genome structural variation discovery and genotyping

(2011) Can Alkan et al.   NATURE REVIEWS GENETICS

Targeted analysis of nucleotide and copy number variation by exon capture in allotetraploid wheat genome

(2011) Cyrille Saintenac et al.   GENOME BIOLOGY

Genome-wide patterns of genetic variation in sweet and grain sorghum (Sorghum bicolor)

(2011) Lei-Ying Zheng et al.   GENOME BIOLOGY

Warm spring temperatures induce persistent season-long changes in shoot development in grapevines

(2010) Markus Keller et al.   ANNALS OF BOTANY

A candidate gene association study on muscat flavor in grapevine (Vitis vinifera L.)

(2010) Francesco Emanuelli et al.   BMC PLANT BIOLOGY

Functional Annotation, Genome Organization and Phylogeny of the Grapevine (Vitis vinifera) Terpene Synthase Gene Family Based on Genome Assembly, FLcDNA Cloning, and Enzyme Assays

(2010) Diane M Martin et al.   BMC PLANT BIOLOGY

Copy Number Variation Shapes Genome Diversity in Arabidopsis Over Immediate Family Generational Scales

(2010) Seth DeBolt   Genome Biology and Evolution

Analysis of copy number variations among diverse cattle breeds

(2010) G. E. Liu et al.   GENOME RESEARCH

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

A map of human genome variation from population-scale sequencing

(2010) Richard M. Durbin et al.   NATURE

A unifying theory for general multigenic heterosis: energy efficiency, protein metabolism, and implications for molecular breeding

(2010) Stephen A. Goff   NEW PHYTOLOGIST

Rice structural variation: a comparative analysis of structural variation between rice and three of its closest relatives in the genus Oryza

(2010) Bonnie L. Hurwitz et al.   PLANT JOURNAL

An integrated genomic, proteomic and biochemical analysis of (+)-3-carene biosynthesis in Sitka spruce (Picea sitchensis) genotypes that are resistant or susceptible to white pine weevil

(2010) Dawn E. Hall et al.   PLANT JOURNAL

The Composition and Origins of Genomic Variation among Individuals of the Soybean Reference Cultivar Williams 82

(2010) W. J. Haun et al.   PLANT PHYSIOLOGY

Diversity of Human Copy Number Variation and Multicopy Genes

(2010) Peter H. Sudmant et al.   SCIENCE

Discovery and characterization of SNPs in Vitis vinifera and genetic assessment of some grapevine cultivars

(2010) Qing-Hua Dong et al.   SCIENTIA HORTICULTURAE

A burst of segmental duplications in the genome of the African great ape ancestor

(2009) Tomas Marques-Bonet et al.   NATURE

Personalized copy number and segmental duplication maps using next-generation sequencing

(2009) Can Alkan et al.   NATURE GENETICS

VitisNet: “Omics” Integration through Grapevine Molecular Networks

(2009) Jérôme Grimplet et al.   PLoS One

Analysis of the grape MYB R2R3 subfamily reveals expanded wine quality-related clades and conserved gene structure organization across Vitis and Arabidopsis genomes

(2008) José Matus et al.   BMC PLANT BIOLOGY