Rapid proliferation and nucleolar organizer targeting centromeric retrotransposons in cotton

Inbreeding drives maize centromere evolution

(2016) Kevin L. Schneider et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The wondrous cycles of polyploidy in plants

(2015) Jonathan F. Wendel   AMERICAN JOURNAL OF BOTANY

Polyploidy and genome evolution in plants

(2015) Pamela S Soltis et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Epigenetic and developmental regulation in plant polyploids

(2015) Qingxin Song et al.   CURRENT OPINION IN PLANT BIOLOGY

Genome sequence of cultivated Upland cotton (Gossypium hirsutum TM-1) provides insights into genome evolution

(2015) Fuguang Li et al.   NATURE BIOTECHNOLOGY

Centromeric chromatin and its dynamics in plants

(2015) Inna Lermontova et al.   PLANT JOURNAL

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Centromere identity from the DNA point of view

(2014) Miroslav Plohl et al.   CHROMOSOMA

The Centromere: Chromatin Foundation for the Kinetochore Machinery

(2014) Tatsuo Fukagawa et al.   DEVELOPMENTAL CELL

Evolution of Centromeric Retrotransposons in Grasses

(2014) Anupma Sharma et al.   Genome Biology and Evolution

Identification of centromeric regions on the linkage map of cotton using centromere-related repeats

(2014) Wenpan Zhang et al.   GENOMICS

Bursts of transposable elements as an evolutionary driving force

(2014) A. Belyayev   JOURNAL OF EVOLUTIONARY BIOLOGY

Boom-Bust Turnovers of Megabase-Sized Centromeric DNA in Solanum Species: Rapid Evolution of DNA Sequences Associated with Centromeres

(2014) H. Zhang et al.   PLANT CELL

The quantitative architecture of centromeric chromatin

(2014) Dani L Bodor et al.   eLife

Tandem repeats derived from centromeric retrotransposons

(2013) Anupma Sharma et al.   BMC GENOMICS

Maize centromeres expand and adopt a uniform size in the genetic background of oat

(2013) K. Wang et al.   GENOME RESEARCH

The dynamics of LTR retrotransposon accumulation across 25 million years of panicoid grass evolution

(2013) M C Estep et al.   HEREDITY

Comparative analysis of tandem repeats from hundreds of species reveals unique insights into centromere evolution

(2013) Daniël P Melters et al.   GENOME BIOLOGY

Genome evolution: extinction, continuation or explosion?

(2012) JS (Pat) Heslop-Harrison   CURRENT OPINION IN PLANT BIOLOGY

Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres

(2012) Andrew H. Paterson et al.   NATURE

Repeatless and Repeat-Based Centromeres in Potato: Implications for Centromere Evolution

(2012) Z. Gong et al.   PLANT CELL

The Cotton Centromere Contains a Ty3-gypsy-like LTR Retroelement

(2012) Song Luo et al.   PLoS One

FastUniq: A Fast De Novo Duplicates Removal Tool for Paired Short Reads

(2012) Haibin Xu et al.   PLoS One

Flexibility of centromere and kinetochore structures

(2012) Laura S. Burrack et al.   TRENDS IN GENETICS

Next Generation Sequencing-Based Analysis of Repetitive DNA in the Model Dioceous Plant Silene latifolia

(2011) Jiří Macas et al.   PLoS One

Organization and Evolution of Subtelomeric Satellite Repeats in the Potato Genome

(2011) Giovana A. Torres et al.   G3-Genes Genomes Genetics

Plant centromeric retrotransposons: a structural and cytogenetic perspective

(2011) Pavel Neumann et al.   Mobile DNA

Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data

(2010) Petr Novák et al.   BMC BIOINFORMATICS

Genetic and Epigenetic Dynamics of a Retrotransposon After Allopolyploidization of Wheat

(2010) Z. Kraitshtein et al.   GENETICS

Mobilization of retrotransposons in synthetic allotetraploid tobacco

(2010) M. Petit et al.   NEW PHYTOLOGIST

A clustering approach for identification of enriched domains from histone modification ChIP-Seq data

(2009) Chongzhi Zang et al.   BIOINFORMATICS

The evolutionary significance of ancient genome duplications

(2009) Yves Van de Peer et al.   NATURE REVIEWS GENETICS

Rapid DNA loss as a counterbalance to genome expansion through retrotransposon proliferation in plants

(2009) J. S. Hawkins et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Maize Centromere Structure and Evolution: Sequence Analysis of Centromeres 2 and 5 Reveals Dynamic Loci Shaped Primarily by Retrotransposons

(2009) Thomas K. Wolfgruber et al.   PLoS Genetics

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Neocentromeres: New Insights into Centromere Structure, Disease Development, and Karyotype Evolution

(2008) Owen J. Marshall et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Structure and dynamics of retrotransposons at wheat centromeres and pericentromeres

(2008) Zhao Liu et al.   CHROMOSOMA

Chromodomains direct integration of retrotransposons to heterochromatin

(2008) X. Gao et al.   GENOME RESEARCH

Intergenic Locations of Rice Centromeric Chromatin

(2008) Huihuang Yan et al.   PLOS BIOLOGY