Bacterial microcompartments as metabolic modules for plant synthetic biology

Assembly, function and evolution of cyanobacterial carboxysomes

(2016) Cheryl A Kerfeld et al.   CURRENT OPINION IN PLANT BIOLOGY

Structure and Function of a Bacterial Microcompartment Shell Protein Engineered to Bind a [4Fe-4S] Cluster

(2016) Clément Aussignargues et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Biochemical characterization of predicted Precambrian RuBisCO

(2016) Patrick M. Shih et al.   Nature Communications

The Structural Basis of Coenzyme A Recycling in a Bacterial Organelle

(2016) Onur Erbilgin et al.   PLOS BIOLOGY

Bioinformatic Characterization of Glycyl Radical Enzyme-Associated Bacterial Microcompartments

(2015) Jan Zarzycki et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Localization of Proteins to the 1,2-Propanediol Utilization Microcompartment by Non-native Signal Sequences Is Mediated by a Common Hydrophobic Motif

(2015) Christopher M. Jakobson et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Visualization of Bacterial Microcompartment Facet Assembly Using High-Speed Atomic Force Microscopy

(2015) Markus Sutter et al.   NANO LETTERS

Streamlined Construction of the Cyanobacterial CO2-Fixing Organelle via Protein Domain Fusions for Use in Plant Synthetic Biology

(2015) C. Raul Gonzalez-Esquer et al.   PLANT CELL

Selective molecular transport through the protein shell of a bacterial microcompartment organelle

(2015) Chiranjit Chowdhury et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bacterial microcompartments and the modular construction of microbial metabolism

(2015) Cheryl A. Kerfeld et al.   TRENDS IN MICROBIOLOGY

Structural Characterization of a Newly Identified Component of α-Carboxysomes: The AAA+ Domain Protein CsoCbbQ

(2015) Markus Sutter et al.   Scientific Reports

Purification and Characterization of Protein Nanotubes Assembled from a Single Bacterial Microcompartment Shell Subunit

(2015) Christopher R. Noël et al.   Advanced Materials Interfaces

Characterization of a Planctomycetal Organelle: a Novel Bacterial Microcompartment for the Aerobic Degradation of Plant Saccharides

(2014) Onur Erbilgin et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Structural Insights into Higher Order Assembly and Function of the Bacterial Microcompartment Protein PduA

(2014) Allan Pang et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Assembly of Robust Bacterial Microcompartment Shells Using Building Blocks from an Organelle of Unknown Function

(2014) Jonathan K. Lassila et al.   JOURNAL OF MOLECULAR BIOLOGY

Diverse Bacterial Microcompartment Organelles

(2014) C. Chowdhury et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

A faster Rubisco with potential to increase photosynthesis in crops

(2014) Myat T. Lin et al.   NATURE

Interactions and structural variability of β-carboxysomal shell protein CcmL

(2014) Thomas J. Keeling et al.   PHOTOSYNTHESIS RESEARCH

Bioinformatic analysis of the distribution of inorganic carbon transporters and prospective targets for bioengineering to increase Ci uptake by cyanobacteria

(2014) Sandeep B. Gaudana et al.   PHOTOSYNTHESIS RESEARCH

Optimizing Rubisco and its regulation for greater resource use efficiency

(2014) ELIZABETE CARMO-SILVA et al.   PLANT CELL AND ENVIRONMENT

β-Carboxysomal proteins assemble into highly organized structures inNicotianachloroplasts

(2014) Myat T. Lin et al.   PLANT JOURNAL

Engineering Bacterial Microcompartment Shells: Chimeric Shell Proteins and Chimeric Carboxysome Shells

(2014) Fei Cai et al.   ACS Synthetic Biology

Solution Structure of a Bacterial Microcompartment Targeting Peptide and Its Application in the Construction of an Ethanol Bioreactor

(2014) Andrew D. Lawrence et al.   ACS Synthetic Biology

A Taxonomy of Bacterial Microcompartment Loci Constructed by a Novel Scoring Method

(2014) Seth D. Axen et al.   PLoS Computational Biology

Biogenesis of a Bacterial Organelle: The Carboxysome Assembly Pathway

(2013) Jeffrey C. Cameron et al.   CELL

The Structure of CcmP, a Tandem Bacterial Microcompartment Domain Protein from the β-Carboxysome, Forms a Subcompartment Within a Microcompartment

(2013) Fei Cai et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Origins and diversity of eukaryotic CO2-concentrating mechanisms: lessons for the future

(2013) Moritz Meyer et al.   JOURNAL OF EXPERIMENTAL BOTANY

Engineering a cyanobacterium as the catalyst for the photosynthetic conversion of CO2 to 1,2-propanediol

(2013) Han Li et al.   Microbial Cell Factories

Functions, Compositions, and Evolution of the Two Types of Carboxysomes: Polyhedral Microcompartments That Facilitate CO2 Fixation in Cyanobacteria and Some Proteobacteria

(2013) B. D. Rae et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Two new high-resolution crystal structures of carboxysome pentamer proteins reveal high structural conservation of CcmL orthologs among distantly related cyanobacterial species

(2013) Markus Sutter et al.   PHOTOSYNTHESIS RESEARCH

Involvement of a Bacterial Microcompartment in the Metabolism of Fucose and Rhamnose by Clostridium phytofermentans

(2013) Elsa Petit et al.   PLoS One

Elucidating Essential Role of Conserved Carboxysomal Protein CcmN Reveals Common Feature of Bacterial Microcompartment Assembly

(2012) James N. Kinney et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Cyanobacterial biofuel production

(2012) Iara M.P. Machado et al.   JOURNAL OF BIOTECHNOLOGY

Bacterial microcompartments moving into a synthetic biological world

(2012) Stefanie Frank et al.   JOURNAL OF BIOTECHNOLOGY

Cyanobacterial-based approaches to improving photosynthesis in plants

(2012) Jan Zarzycki et al.   JOURNAL OF EXPERIMENTAL BOTANY

The cyanobacterial CCM as a source of genes for improving photosynthetic CO2 fixation in crop species

(2012) G. Dean Price et al.   JOURNAL OF EXPERIMENTAL BOTANY

Engineered Protein Nano-Compartments for Targeted Enzyme Localization

(2012) Swati Choudhary et al.   PLoS One

Structural Determinants of the Outer Shell of β-Carboxysomes in Synechococcus elongatus PCC 7942: Roles for CcmK2, K3-K4, CcmO, and CcmL

(2012) Benjamin D. Rae et al.   PLoS One

A Dodecameric CcmK2 Structure Suggests β-Carboxysomal Shell Facets Have a Double-Layered Organization

(2012) Bożena Samborska et al.   STRUCTURE

Designing biological compartmentalization

(2012) Anna H. Chen et al.   TRENDS IN CELL BIOLOGY

Structure of PduT, a trimeric bacterial microcompartment protein with a 4Fe–4S cluster-binding site

(2011) Allan Pang et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

The N-Terminal Region of the Medium Subunit (PduD) Packages Adenosylcobalamin-Dependent Diol Dehydratase (PduCDE) into the Pdu Microcompartment

(2011) C. Fan et al.   JOURNAL OF BACTERIOLOGY

Isolation and Characterization of the Prochlorococcus Carboxysome Reveal the Presence of the Novel Shell Protein CsoS1D

(2011) E. W. Roberts et al.   JOURNAL OF BACTERIOLOGY

Metabolic engineering of cyanobacteria for 1-butanol production from carbon dioxide

(2011) Ethan I. Lan et al.   METABOLIC ENGINEERING

Self-assembling, protein-based intracellular bacterial organelles: emerging vehicles for encapsulating, targeting and delivering therapeutical cargoes

(2011) José L Corchero et al.   Microbial Cell Factories

Structure and function of the AAA+ protein CbbX, a red-type Rubisco activase

(2011) Oliver Mueller-Cajar et al.   NATURE

Comparative analysis of carboxysome shell proteins

(2011) James N. Kinney et al.   PHOTOSYNTHESIS RESEARCH

Inorganic carbon transporters of the cyanobacterial CO2 concentrating mechanism

(2011) G. Dean Price   PHOTOSYNTHESIS RESEARCH

Modularity of a carbon-fixing protein organelle

(2011) W. Bonacci et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Improving Photosynthetic Efficiency for Greater Yield

(2010) Xin-Guang Zhu et al.   Annual Review of Plant Biology

The Carboxysome Shell Is Permeable to Protons

(2010) B. B. Menon et al.   JOURNAL OF BACTERIOLOGY

Crystallographic Insights into the Pore Structures and Mechanisms of the EutL and EutM Shell Proteins of the Ethanolamine-Utilizing Microcompartment of Escherichia coli

(2010) M. Takenoya et al.   JOURNAL OF BACTERIOLOGY

Structural Insight into the Mechanisms of Transport across theSalmonella entericaPdu Microcompartment Shell

(2010) Christopher S. Crowley et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Synthesis of Empty Bacterial Microcompartments, Directed Organelle Protein Incorporation, and Evidence of Filament-Associated Organelle Movement

(2010) Joshua B. Parsons et al.   MOLECULAR CELL

Functional Cyanobacterial  -Carboxysomes Have an Absolute Requirement for Both Long and Short Forms of the CcmM Protein

(2010) B. M. Long et al.   PLANT PHYSIOLOGY

Short N-terminal sequences package proteins into bacterial microcompartments

(2010) C. Fan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structural basis of the oxidative activation of the carboxysomal  -carbonic anhydrase, CcmM

(2010) K. L. Pena et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cross-species analysis traces adaptation of Rubisco toward optimality in a low-dimensional landscape

(2010) Yonatan Savir et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Spatially Ordered Dynamics of the Bacterial Carbon Fixation Machinery

(2010) D. F. Savage et al.   SCIENCE

Microbial Biosynthesis of Alkanes

(2010) A. Schirmer et al.   SCIENCE

Carboxysomal carbonic anhydrases: Structure and role in microbial CO2 fixation

(2009) Gordon C. Cannon et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

Identification and Structural Analysis of a Novel Carboxysome Shell Protein with Implications for Metabolite Transport

(2009) Michael G. Klein et al.   JOURNAL OF MOLECULAR BIOLOGY

Organization, Structure, and Assembly of α-Carboxysomes Determined by Electron Cryotomography of Intact Cells

(2009) Cristina V. Iancu et al.   JOURNAL OF MOLECULAR BIOLOGY

Synthetic protein scaffolds provide modular control over metabolic flux

(2009) John E Dueber et al.   NATURE BIOTECHNOLOGY

The Pentameric Vertex Proteins Are Necessary for the Icosahedral Carboxysome Shell to Function as a CO2 Leakage Barrier

(2009) Fei Cai et al.   PLoS One

Crystal structure of the EutL shell protein of the ethanolamine ammonia lyase microcompartment

(2009) M. Sagermann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microcompartments for B12-Dependent 1,2-Propanediol Degradation Provide Protection from DNA and Cellular Damage by a Reactive Metabolic Intermediate

(2008) E. M. Sampson et al.   JOURNAL OF BACTERIOLOGY

Biochemical and Structural Insights into Bacterial Organelle Form and Biogenesis

(2008) Joshua B. Parsons et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

CO2Fixation Kinetics ofHalothiobacillus neapolitanusMutant Carboxysomes Lacking Carbonic Anhydrase Suggest the Shell Acts as a Diffusional Barrier for CO2

(2008) Zhicheng Dou et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Halothiobacillus neapolitanus Carboxysomes Sequester Heterologous and Chimeric RubisCO Species

(2008) Balaraj B. Menon et al.   PLoS One

Atomic-Level Models of the Bacterial Carboxysome Shell

(2008) S. Tanaka et al.   SCIENCE

Structure of the PduU Shell Protein from the Pdu Microcompartment of Salmonella

(2008) Christopher S. Crowley et al.   STRUCTURE