miRNA-mediated auxin signalling repression during Vat -mediated aphid resistance in Cucumis melo

Beyond cleaved small RNA targets: unraveling the complexity of plant RNA degradome data

(2014) Cheng-Yu Hou et al.   BMC GENOMICS

miRNAs in the crosstalk between phytohormone signalling pathways

(2014) J. Curaba et al.   JOURNAL OF EXPERIMENTAL BOTANY

Plant immunity in plant–aphid interactions

(2014) Maëlle Jaouannet et al.   Frontiers in Plant Science

Jasmonate signalling: a copycat of auxin signalling?

(2013) A. CUÉLLAR PÉREZ et al.   PLANT CELL AND ENVIRONMENT

Molecular Signatures in Arabidopsis thaliana in Response to Insect Attack and Bacterial Infection

(2013) Pankaj Barah et al.   PLoS One

An axr1 suppressor mutation in Arabidopsis that partially restores auxin signaling also reverses defects in jasmonate response

(2013) İskender TİRYAKİ et al.   Turkish Journal of Agriculture and Forestry

Arabidopsis thaliana—Myzus persicae interaction: shaping the understanding of plant defense against phloem-feeding aphids

(2013) Joe Louis et al.   Frontiers in Plant Science

DICER-like Proteins and Their Role in Plant-herbivore Interactions in Nicotiana attenuata

(2012) Tohir Ahmadovich Bozorov et al.   Journal of Integrative Plant Biology

Boolean modeling of biological regulatory networks: A methodology tutorial

(2012) Assieh Saadatpour et al.   METHODS

Cucumis meloMicroRNA Expression Profile During Aphid Herbivory in a Resistant and Susceptible Interaction

(2012) Sampurna Sattar et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Multiple Phytohormone Signals Control the Transcriptional Response to Soybean Aphid Infestation in Susceptible and Resistant Soybean Plants

(2012) Matthew E. Studham et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

The Interaction and Integration of Auxin Signaling Components

(2012) K.-i. Hayashi   PLANT AND CELL PHYSIOLOGY

Arabidopsis Class I and Class II TCP Transcription Factors Regulate Jasmonic Acid Metabolism and Leaf Development Antagonistically

(2012) S. Danisman et al.   PLANT PHYSIOLOGY

Phytohormonal signaling in plant responses to aphid feeding

(2011) Iwona Morkunas et al.   ACTA PHYSIOLOGIAE PLANTARUM

Phytozome: a comparative platform for green plant genomics

(2011) David M. Goodstein et al.   NUCLEIC ACIDS RESEARCH

Herbivory in the Previous Generation Primes Plants for Enhanced Insect Resistance

(2011) S. Rasmann et al.   PLANT PHYSIOLOGY

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

miRBase: integrating microRNA annotation and deep-sequencing data

(2010) A. Kozomara et al.   NUCLEIC ACIDS RESEARCH

TCP Transcription Factors Regulate the Activities of ASYMMETRIC LEAVES1 and miR164, as Well as the Auxin Response, during Differentiation of Leaves in Arabidopsis

(2010) T. Koyama et al.   PLANT CELL

miR390,Arabidopsis TAS3tasiRNAs, and TheirAUXIN RESPONSE FACTORTargets Define an Autoregulatory Network Quantitatively Regulating Lateral Root Growth

(2010) Elena Marin et al.   PLANT CELL

Transcriptome-wide identification of microRNA targets in rice

(2010) Yong-Fang Li et al.   PLANT JOURNAL

Mapping and validation of QTLs for resistance to aphids and whiteflies in melon

(2010) Nathalie Boissot et al.   THEORETICAL AND APPLIED GENETICS

Activation of ethylene-related genes in response to aphid feeding on resistant and susceptible melon and tomato plants

(2009) James Anstead et al.   ENTOMOLOGIA EXPERIMENTALIS ET APPLICATA

Linking development to defense: auxin in plant–pathogen interactions

(2009) Kemal Kazan et al.   TRENDS IN PLANT SCIENCE

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

CleaveLand: a pipeline for using degradome data to find cleaved small RNA targets

(2008) C. Addo-Quaye et al.   BIOINFORMATICS

Endogenous siRNA and miRNA Targets Identified by Sequencing of the Arabidopsis Degradome

(2008) Charles Addo-Quaye et al.   CURRENT BIOLOGY

Global identification of microRNA–target RNA pairs by parallel analysis of RNA ends

(2008) Marcelo A German et al.   NATURE BIOTECHNOLOGY

Jasmonate Signaling: Toward an Integrated View

(2008) K. Kazan et al.   PLANT PHYSIOLOGY

Herbivory-induced changes in the small-RNA transcriptome and phytohormone signaling in Nicotiana attenuata

(2008) S. P. Pandey et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Widespread Translational Inhibition by Plant miRNAs and siRNAs

(2008) P. Brodersen et al.   SCIENCE

Control of Jasmonate Biosynthesis and Senescence by miR319 Targets

(2008) Carla Schommer et al.   PLOS BIOLOGY