Stochastic alternative splicing is prevalent in mungbean (Vigna radiata)

Draft genome sequence of adzuki bean, Vigna angularis

(2015) Yang Jae Kang et al.   Scientific Reports

Alternatively Spliced Homologous Exons Have Ancient Origins and Are Highly Expressed at the Protein Level

(2015) Federico Abascal et al.   PLoS Computational Biology

Cell-Specific Alternative Splicing of Drosophila Dscam2 Is Crucial for Proper Neuronal Wiring

(2014) Grace Ji-eun Lah et al.   NEURON

Genome-Wide Analysis of Alternative Splicing in Zea mays: Landscape and Genetic Regulation

(2014) S. R. Thatcher et al.   PLANT CELL

Global Dissection of Alternative Splicing in Paleopolyploid Soybean

(2014) Yanting Shen et al.   PLANT CELL

Genome sequence of mungbean and insights into evolution within Vigna species

(2014) Yang Jae Kang et al.   Nature Communications

Widespread Use of Non-productive Alternative Splice Sites in Saccharomyces cerevisiae

(2014) Tadashi Kawashima et al.   PLoS Genetics

Nonsense-Mediated Decay of Alternative Precursor mRNA Splicing Variants Is a Major Determinant of the Arabidopsis Steady State Transcriptome

(2013) G. Drechsel et al.   PLANT CELL

Genome-wide study of NAGNAG alternative splicing in Arabidopsis

(2013) Yanjing Shi et al.   PLANTA

Unproductive alternative splicing and nonsense mRNAs: A widespread phenomenon among plant circadian clock genes

(2012) Sergei A Filichkin et al.   Biology Direct

Transcriptome survey reveals increased complexity of the alternative splicing landscape inArabidopsis

(2012) Yamile Marquez et al.   GENOME RESEARCH

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Quantification of stochastic noise of splicing and polyadenylation in Entamoeba histolytica

(2012) Chung-Chau Hon et al.   NUCLEIC ACIDS RESEARCH

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Function annotation of the rice transcriptome at single-nucleotide resolution by RNA-seq

(2010) T. Lu et al.   GENOME RESEARCH

Noisy Splicing Drives mRNA Isoform Diversity in Human Cells

(2010) Joseph K. Pickrell et al.   PLoS Genetics

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Noisy splicing, more than expression regulation, explains why some exons are subject to nonsense-mediated mRNA decay

(2009) Zhenguo Zhang et al.   BMC BIOLOGY

Comparative analysis indicates that alternative splicing in plants has a limited role in functional expansion of the proteome

(2009) Edouard I Severing et al.   BMC GENOMICS

Alternative splicing of anciently exonized 5S rRNA regulates plant transcription factor TFIIIA

(2009) Y. Fu et al.   GENOME RESEARCH

Genome-wide mapping of alternative splicing in Arabidopsis thaliana

(2009) S. A. Filichkin et al.   GENOME RESEARCH

Stochastic noise in splicing machinery

(2009) Eugene Melamud et al.   NUCLEIC ACIDS RESEARCH

Structural implication of splicing stochastics

(2009) E. Melamud et al.   NUCLEIC ACIDS RESEARCH

Genome-wide analyses of alternative splicing in plants: Opportunities and challenges

(2008) W. B. Barbazuk et al.   GENOME RESEARCH

Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing

(2008) Qun Pan et al.   NATURE GENETICS

Alternative splicing: current perspectives

(2007) Eddo Kim et al.   BIOESSAYS