Troponin structure: its modulation by Ca2+ and phosphorylation studied by molecular dynamics simulations

Atomic resolution probe for allostery in the regulatory thin filament

(2016) Michael R. Williams et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Effects of HCM cTnI Mutation R145G on Troponin Structure and Modulation by PKA Phosphorylation Elucidated by Molecular Dynamics Simulations

(2015) Steffen Lindert et al.   BIOPHYSICAL JOURNAL

MDTraj: A Modern Open Library for the Analysis of Molecular Dynamics Trajectories

(2015) Robert T. McGibbon et al.   BIOPHYSICAL JOURNAL

Long-Time-Step Molecular Dynamics through Hydrogen Mass Repartitioning

(2015) Chad W. Hopkins et al.   Journal of Chemical Theory and Computation

An Atomic Model of the Tropomyosin Cable on F-actin

(2014) Marek Orzechowski et al.   BIOPHYSICAL JOURNAL

PKA Phosphorylation of Cardiac Troponin I Modulates Activation and Relaxation Kinetics of Ventricular Myofibrils

(2014) Vijay Rao et al.   BIOPHYSICAL JOURNAL

Three-Dimensional Organization of Troponin on Cardiac Muscle Thin Filaments in the Relaxed State

(2014) Shixin Yang et al.   BIOPHYSICAL JOURNAL

Computational Studies of the Effect of the S23D/S24D Troponin I Mutation on Cardiac Troponin Structural Dynamics

(2014) Yuanhua Cheng et al.   BIOPHYSICAL JOURNAL

Evaluation of Enhanced Sampling Provided by Accelerated Molecular Dynamics with Hamiltonian Replica Exchange Methods

(2014) Daniel R. Roe et al.   JOURNAL OF PHYSICAL CHEMISTRY B

The cardiac-specific N-terminal region of troponin I positions the regulatory domain of troponin C

(2014) Peter M. Hwang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structural and functional consequences of cardiac troponin C L57Q and I61Q Ca2+-desensitizing variants

(2013) Dan Wang et al.   ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS

Familial dilated cardiomyopathy mutations uncouple troponin I phosphorylation from changes in myofibrillar Ca2+ sensitivity

(2013) Massimiliano Memo et al.   CARDIOVASCULAR RESEARCH

PTRAJ and CPPTRAJ: Software for Processing and Analysis of Molecular Dynamics Trajectory Data

(2013) Daniel R. Roe et al.   Journal of Chemical Theory and Computation

Routine Microsecond Molecular Dynamics Simulations with AMBER on GPUs. 2. Explicit Solvent Particle Mesh Ewald

(2013) Romelia Salomon-Ferrer et al.   Journal of Chemical Theory and Computation

Long-Timescale Molecular Dynamics Simulations Elucidate the Dynamics and Kinetics of Exposure of the Hydrophobic Patch in Troponin C

(2012) Steffen Lindert et al.   BIOPHYSICAL JOURNAL

SPFP: Speed without compromise—A mixed precision model for GPU accelerated molecular dynamics simulations

(2012) Scott Le Grand et al.   COMPUTER PHYSICS COMMUNICATIONS

Dynamics and Calcium Association to the N-Terminal Regulatory Domain of Human Cardiac Troponin C: A Multiscale Computational Study

(2012) Steffen Lindert et al.   JOURNAL OF PHYSICAL CHEMISTRY B

ProDy: Protein Dynamics Inferred from Theory and Experiments

(2011) A. Bakan et al.   BIOINFORMATICS

In VivoPhosphorylation Site Mapping in Mouse Cardiac Troponin I by High Resolution Top-Down Electron Capture Dissociation Mass Spectrometry: Ser22/23 Are the Only Sites Basally Phosphorylated

(2009) Serife Ayaz-Guner et al.   BIOCHEMISTRY

The unique functions of cardiac troponin I in the control of cardiac muscle contraction and relaxation

(2008) R. John Solaro et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS