Article
Evolutionary Biology
Manu Kumar Gundappa, Carolina Penaloza, Tim Regan, Isabelle Boutet, Arnaud Tanguy, Ross D. Houston, Tim P. Bean, Daniel J. Macqueen
Summary: In this study, we report a chromosome-level assembly and annotation for the European flat oyster genome, which provides valuable genomic resources for conservation and aquaculture efforts. The assembly was verified for accuracy and completeness, and the annotation identified a large number of protein-coding genes. This new reference genome improves our understanding of bivalve genome evolution and enables high-resolution genomics in support of conservation and aquaculture initiatives.
EVOLUTIONARY APPLICATIONS
(2022)
Article
Evolutionary Biology
Katherine M. Hornick, Louis Plough
Summary: This study highlights the importance of understanding genetic variation within and among natural populations for conservation and restoration efforts. The research demonstrated the significant impact of hatchery practices on genetic diversity and the role of environmental factors in shaping genetic variation in marine invertebrates. The findings contribute valuable insights for the management of fisheries resources and emphasize the need for careful consideration of genetic diversity in restoration initiatives.
EVOLUTIONARY APPLICATIONS
(2022)
Article
Evolutionary Biology
Sylvie Lapegue, Celine Reisser, Estelle Harrang, Serge Heurtebise, Nicolas Bierne
Summary: Oyster reefs have suffered the greatest losses among all marine ecosystems. Efforts have been made to restore these ecosystems, and a recent study focused on the genetic differentiation among oyster populations in Europe. The study detected genetic differentiation between Atlantic and Mediterranean populations, identified potential aquaculture-related translocations, and found a parallel pattern of differentiation between certain populations. This information will be useful for the selection of animals for translocation and restocking.
EVOLUTIONARY APPLICATIONS
(2023)
Article
Evolutionary Biology
Tim P. Bean, Arnaud Tanguy, Carolina Penaloza, Manu Kumar Gundappa, Isabelle Boutet, Ross D. Houston, Daniel J. Macqueen, Pierre Boudry
Summary: This article introduces the publication of two genomes for the European native flat oyster Ostrea edulis, which is a species of significant evolutionary, ecological, and commercial importance. Two independent research groups decided to collaborate and publish separate genome resources for the research community, recognizing the benefit of benchmarking the assemblies together.
EVOLUTIONARY APPLICATIONS
(2022)
Article
Environmental Sciences
Brecht Stechele, Leo Barbut, Genevieve Lacroix, Luca A. van Duren, Vera Van Lancker, Steven Degraer, Giacomo Montereale Gavazzi, Peter Bossier, Annelies M. Declercq, Nancy Nevejan
Summary: By combining seabed substrate information with population and particle tracking models, this study provides insights into the spatial distribution of suitability indicators for flat oyster habitat restoration. The study finds that coastal and nearshore environments are more suitable for restoration projects. Additionally, the model can be used to evaluate the impact of management strategies and environmental pressures on restoration success.
FRONTIERS IN MARINE SCIENCE
(2023)
Article
Fisheries
Fiz da Costa, Ricardo Gonzales-Araya, Rene Robert
Summary: This study investigated the effects of broodstock and larval diets on larval growth, survival, competence, metamorphosis, and fatty acid and sterol compositions. The results showed that broodstock fed with Rs + C produced more larvae compared to those fed with Rs + Tw. Larval growth, survival, competence, and settlement were influenced by both broodstock and larval diets. Larvae fed with T + C originating from broodstock fed with Rs + C exhibited the best overall performance.
Review
Fisheries
Berenger Colsoul, Pierre Boudry, Maria Luz Perez-Paralle, Ana Bratos Cetinic, Tristan Hugh-Jones, Isabelle Arzul, Nicolas Merou, Karl Mathias Wegner, Corina Peter, Verena Merk, Bernadette Pogoda
Summary: The research provides a summary of all available knowledge and technologies of O. edulis seed production, reflecting on current challenges, unanswered questions, and future research topics to ensure sustainable seed supply. It covers different aspects including biology, stressors, genetics, history of production technologies, and methods of seed production.
REVIEWS IN AQUACULTURE
(2021)
Article
Environmental Sciences
M. Albentosa, M. I. Akinyemi, M. Vera, I. Ibarrola, R. Filgueira, E. Galimany, F. da Costa, B. G. Pardo, M. Vazquez-Luis, A. Hernandez, S. Hernandis, P. Martinez
Summary: The release of nitrogen and phosphorus into Mar Menor coastal lagoon due to tourism and agriculture has caused a phytoplankton bloom and the death of benthic macrophytes. The study focuses on quantifying the clearance rate of Mar Menor oysters under eutrophized conditions and their genetic origin for potential bioremediation applications. The research suggests that the recovery of half of the oyster population, using clearance rate measurements to select oysters as broodstock, and using Mediterranean oysters as alternatives for reproduction failure in Mar Menor oysters could be effective strategies for future restoration actions.
AQUATIC CONSERVATION-MARINE AND FRESHWATER ECOSYSTEMS
(2023)
Article
Environmental Sciences
Hannah Z. L. Lee, Ian M. Davies, John M. Baxter, Karen Diele, William G. Sanderson
Summary: This study aims to examine the carbon budget of European flat oysters and provide a framework for comparing carbon budgets between different ecosystems in the future.
AQUATIC CONSERVATION-MARINE AND FRESHWATER ECOSYSTEMS
(2023)
Article
Marine & Freshwater Biology
Alicia Castle, Nathan Waltham
Summary: Restoring coastal estuaries impacted by modification and habitat loss requires species-specific data to increase success. Oyster reefs have been extensively lost and restoration efforts lack sufficient species data. The feeding rate of Isognomon ephippium decreases with longer exposure time and higher water temperatures. The natural shift in tides in Townsville provides important thermal refugia strategies for oysters.
ESTUARINE COASTAL AND SHELF SCIENCE
(2022)
Article
Ecology
Per Bergstrom, Linnea Thorngren, Mats Lindegarth
Summary: Human activities are increasingly affecting marine coastal areas, resulting in changes in species and habitat distributions. Understanding these patterns and their causes and consequences is crucial for the conservation and restoration of these evolving habitats.
ECOLOGY AND EVOLUTION
(2022)
Article
Environmental Sciences
Brecht Stechele, Anna Hughes, Steven Degraer, Peter Bossier, Nancy Nevejan
Summary: After years of depletion, efforts are being made to protect and restore European flat oyster habitats in the North Sea, English Channel, Irish Sea, and the northeastern Atlantic. Understanding their habitat requirements is crucial for successful restoration projects.
AQUATIC CONSERVATION-MARINE AND FRESHWATER ECOSYSTEMS
(2023)
Article
Engineering, Marine
Drazen Oraic, Relja Beck, Zeljko Pavlinec, Ivana Giovanna Zupicic, Ljupka Maltar, Tihana Miskic, Zaklin Acinger-Rogic, Snjezana Zrncic
Summary: The annual production of European flat oysters in Croatia is about 50 to 65 tons and has a long tradition. A national surveillance program detected the presence of Bonamia spp. parasite since 2016, with no mortalities reported, calling for further molecular and epidemiological studies.
JOURNAL OF MARINE SCIENCE AND ENGINEERING
(2021)
Article
Genetics & Heredity
Carolina Penaloza, Agustin Barria, Athina Papadopoulou, Chantelle Hooper, Joanne Preston, Matthew Green, Luke Helmer, Jacob Kean-Hammerson, Jennifer C. Nascimento-Schulze, Diana Minardi, Manu Kumar Gundappa, Daniel J. Macqueen, John Hamilton, Ross D. Houston, Tim P. Bean
Summary: The study evaluated the potential of genomic selection for improving growth traits in European flat oyster populations. The heritability of growth traits was low to moderate, and a polygenic architecture was observed. Genomic prediction accuracies using low-density SNP panels were high.
FRONTIERS IN GENETICS
(2022)
Article
Fisheries
Pauline Kamermans, Ainhoa Blanco, Pim van Dalen, Marc Engelsma, Nienke Bakker, Pascalle Jacobs, Marco Dubbeldam, Ines M. Sambade, Manuel Vera, Paulino Martinez
Summary: This study collected infected flat oysters (Ostrea edulis) with the pathogenic parasite Bonamia ostreae in the Dutch Delta area and successfully selected individuals with Bonamia resistance to produce Bonamia-free larvae. The results showed that it is possible to screen for individuals with resistance to Bonamia during the hatchery production of flat oysters. Evaluation: 8 points.
AQUATIC LIVING RESOURCES
(2023)
Article
Marine & Freshwater Biology
Cass Bromley, Ciaran McGonigle, Elizabeth Clare Ashton, Dai Roberts
Article
Marine & Freshwater Biology
Nadescha Zwerschke, Judith Kochmann, Elizabeth C. Ashton, Tasman P. Crowe, Dai Roberts, Nessa E. O'connor
JOURNAL OF THE MARINE BIOLOGICAL ASSOCIATION OF THE UNITED KINGDOM
(2018)
Article
Oceanography
Ngo Thuy Diem Trang, Elizabeth C. Ashton, Nguyen Chau Thanh Tung, Nguyen Hai Thanh, Nguyen Van Cong, Tran Sy Nam, Nguyen Cong Thuan, Huynh Cong Khanh, Nguyen Phuong Duy, Nguyen Nhat Truong
Summary: The mangroves in the Mekong Delta in Vietnam have been degraded and lost due to various factors. To support local livelihoods and promote replanting, a 20-year mangrove lease program was initiated. However, the age of mangrove stands does not significantly affect shrimp productivity in integrated mangrove-shrimp systems. Water level management is identified as a key factor.
OCEAN & COASTAL MANAGEMENT
(2022)
Article
Environmental Studies
Lawrence E. Eagling, Elizabeth C. Ashton, Josh Eagle
Article
Environmental Sciences
EC Ashton, PJ Hogarth, DJ MacIntosh
Article
Ecology
EC Ashton, DJ Macintosh, PJ Hogarth
JOURNAL OF TROPICAL ECOLOGY
(2003)
Article
Marine & Freshwater Biology
DJ Macintosh, EC Ashton, S Havanon
ESTUARINE COASTAL AND SHELF SCIENCE
(2002)
Article
Forestry
EC Ashton, DJ Macintosh
FOREST ECOLOGY AND MANAGEMENT
(2002)
Article
Ecology
EC Ashton
JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY
(2002)
Article
Oceanography
Ha-Kyung Kim, In-Hwan Cho, Eun-A Hwang, Young-Hyo Kim, Jeong-Suk Moon, Bae-Kyung Park, Baik-Ho Kim
Summary: This study investigated the distribution of diatoms in 324 estuaries on the Korean Peninsula from 2016 to 2018, with a focus on the ecological impact of artificial dams. The results highlighted the complex interactions between dams, land use, and diatom communities, providing important data for ecosystem management and biodiversity conservation. Understanding the consequences of artificial dams on diatom distribution is crucial for preserving estuarine health.
OCEAN & COASTAL MANAGEMENT
(2024)
Article
Oceanography
Tianhang Gao, Jia Tian, Chuan Huang, Hongyu Wu, Xing Xu, Changjian Liu
Summary: This study explores the microcontainer transport service and route selection problem within the context of a new transportation corridor. A multiobjective planning model is established to minimize transportation cost, time, and carbon emissions. The findings demonstrate that the New Western Land and Sea Corridor is appealing for time-sensitive cargoes and can enhance economic benefits with supportive policies.
OCEAN & COASTAL MANAGEMENT
(2024)
Article
Oceanography
Jintao Ma, Zhengjie Wu, Mengqian Guo, Qiuguang Hu
Summary: With the deepening of economic globalization and regional economic integration, marine fisheries are becoming increasingly connected to national strategic interests and economic vitality. It is necessary to explore the synergistic evolution of marine fisheries economic development, environmental protection, and technological progress in order to promote sustainable and healthy development of marine fisheries.
OCEAN & COASTAL MANAGEMENT
(2024)
Article
Oceanography
Wenhan Ren, Yuhan Xu, Jing Ni
Summary: This paper focuses on the key role of human economic activities in the evolution of ecological security from the perspective of eco-industrial symbiosis and constructs a symbiotic system of indicators considering human economic activities and all subsystems. The research findings reveal that in China's coastal areas, the socio-economic development index shows a stable upward trend, the environmental capacity index remains stable, and the ecological impact index shows a fluctuating and undulating trend.
OCEAN & COASTAL MANAGEMENT
(2024)
Article
Oceanography
Xiao Zhou
Summary: This study develops a spatial risk assessment approach for maritime transportation in China using machine learning and geospatial big data. The study identifies wave height, rainfall, and sea surface temperature as the most influential factors affecting navigational safety. It also analyzes the matching relationship between coastal search and rescue resources and maritime transportation risks.
OCEAN & COASTAL MANAGEMENT
(2024)
Review
Oceanography
X. Yang, Z. Y. Lin, W. J. Zhang, S. Xu, M. Y. Zhang, Z. D. Wu, B. Han
Summary: The study highlights the increasing importance of Arctic navigation safety and identifies gaps in the application of risk assessment methodologies. It calls for decision-oriented modelling techniques and bridging the gap between academic research and practical application.
OCEAN & COASTAL MANAGEMENT
(2024)
Article
Oceanography
Vladimir J. Alarcon, Anna C. Linhoss, Christopher R. Kelble, Paul F. Mickle, Alexandra Fine, Enrique Montes
Summary: Estuaries and coastal areas are undergoing rapid changes due to climate change and sea level rise. This research presents a salinity transport model for Biscayne Bay and investigates the potential impacts of altered precipitation, increased salinity/temperature, and sea level rise on bay salinity. The findings suggest that current restoration plans may not be sufficient to maintain current salinity conditions, and management measures such as urban greening, artificial groundwater recharge, and water consumption reduction should be considered.
OCEAN & COASTAL MANAGEMENT
(2024)
Article
Oceanography
Manuel Vargas-Yanez, Ana Reeves-Bueno, Sara Fernandez-Topham, Francina Moya, Enrique Ballesteros, Cristina Alonso, Teresa Perez-Sanchez, Patricia Romero-Fernandez, Silvia Sanchez-Aguado, Ricardo Felix Sanchez-Leal, M. Carmen Garcia-Martinez
Summary: This study analyzed the phytoplankton communities in the upper 100 m of the Gulf of Cadiz and the Alboran Sea using time series data. The results show that these two regions can be considered as two differentiated bioregions, with the latter having higher productivity.
OCEAN & COASTAL MANAGEMENT
(2024)
Article
Oceanography
Donna Dimarchopoulou, Ioannis Keramidas, Konstantinos Tsagarakis, Vasiliki Markantonatou, Ghassen Halouani, Athanassios C. Tsikliras
Summary: The study shows that spatiotemporal simulation modeling is an effective tool for investigating management options in ecosystem-based fisheries management. It demonstrates that fisheries restricted areas can help rebuild the biomass of exploited stocks, but their effectiveness depends on the size and location of the areas. The study also suggests that a parallel reduction in total fishing effort is necessary to achieve the highest benefits of protection.
OCEAN & COASTAL MANAGEMENT
(2024)
Article
Oceanography
Junita D. Karlsen, Ludvig Ahm Krag, Bent Herrmann
Summary: Fisheries management is transitioning from a single-species approach to an ecosystem-based approach to address the complexities of mixed-species fisheries. A dual compartment codend concept can provide a complex selectivity profile and allow for flexible adjustments at sea, improving compliance with management objectives.
OCEAN & COASTAL MANAGEMENT
(2024)
Article
Oceanography
Yi-Zhuo Zhang, Cheng Xue, Na Wang, Gang Chen
Summary: This paper evaluates typical coastal provinces and cities in China, constructing an evaluation indicator system and clarifying the regional differences in the sustainable development capacity of China's marine fisheries industry. The results show that Shandong Province and Fujian Province have advantages in sustainable development, while Tianjin, Hebei Province, and Shanghai have room for improvement.
OCEAN & COASTAL MANAGEMENT
(2024)
Article
Oceanography
Caimao Tan, Tiantian Qin, Junliang He, Yu Wang, Hang Yu
Summary: This study addresses the storage space allocation problem of container yards based on the dual-cycle operation mode. A mixed integer programming model is established to optimize container transportation distance. The results show that dual-cycle operation can decrease transportation distance and the space allocation method based on it is more effective than traditional methods. The study also provides management insights for container ports and suggests effective solutions for bottleneck problems.
OCEAN & COASTAL MANAGEMENT
(2024)
Article
Oceanography
Haye H. Geukes, Peter M. van Bodegom, Alexander P. E. van Oudenhoven
Summary: This study aims to identify and explore the information requirements at different stages of the decision-making process of coastal nature-based solutions (NbS). The study found substantial differences in information requirements across the decision-making stages, with values and indicators becoming more specific and concrete as the stages progressed. The study also suggests that future changes in the information required for decision-making on coastal NbS can be anticipated and prepared for.
OCEAN & COASTAL MANAGEMENT
(2024)