The structure and intermolecular forces of DNA condensates

Improved Parameterization of Amine–Carboxylate and Amine–Phosphate Interactions for Molecular Dynamics Simulations Using the CHARMM and AMBER Force Fields

(2015) Jejoong Yoo et al.   Journal of Chemical Theory and Computation

Understanding Nucleic Acid–Ion Interactions

(2014) Jan Lipfert et al.   Annual Review of Biochemistry

Why double-stranded RNA resists condensation

(2014) Igor S. Tolokh et al.   NUCLEIC ACIDS RESEARCH

Repulsive DNA-DNA Interactions Accelerate Viral DNA Packaging in Phage Phi29

(2014) Nicholas Keller et al.   PHYSICAL REVIEW LETTERS

Nonequilibrium dynamics and ultraslow relaxation of confined DNA during viral packaging

(2014) Z. T. Berndsen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Solid-to-fluid-like DNA transition in viruses facilitates infection

(2014) T. Liu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evidence for an electrostatic mechanism of force generation by the bacteriophage T4 DNA packaging motor

(2014) Amy D. Migliori et al.   Nature Communications

A Comparison of DNA Compaction by Arginine and Lysine Peptides: A Physical Basis for Arginine Rich Protamines

(2013) Jason DeRouchey et al.   BIOCHEMISTRY

Ion Competition in Condensed DNA Arrays in the Attractive Regime

(2013) Xiangyun Qiu et al.   BIOPHYSICAL JOURNAL

Membrane-Mediated Protein-Protein Interactions and Connection to Elastic Models: A Coarse-Grained Simulation Analysis of Gramicidin A Association

(2013) Jejoong Yoo et al.   BIOPHYSICAL JOURNAL

Exploring the three-dimensional organization of genomes: interpreting chromatin interaction data

(2013) Job Dekker et al.   NATURE REVIEWS GENETICS

Competitive Binding of Cations to Duplex DNA Revealed through Molecular Dynamics Simulations

(2012) Jejoong Yoo et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Improved Parametrization of Li+, Na+, K+, and Mg2+ Ions for All-Atom Molecular Dynamics Simulations of Nucleic Acid Systems

(2011) Jejoong Yoo et al.   Journal of Physical Chemistry Letters

Salt-Dependent DNA-DNA Spacings in Intact BacteriophageλReflect Relative Importance of DNA Self-Repulsion and Bending Energies

(2011) Xiangyun Qiu et al.   PHYSICAL REVIEW LETTERS

Nanomaterials Based on DNA

(2010) Nadrian C. Seeman   Annual Review of Biochemistry

Electrostatics of Strongly Charged Biological Polymers: Ion-Mediated Interactions and Self-Organization in Nucleic Acids and Proteins

(2010) Gerard C.L. Wong et al.   Annual Review of Physical Chemistry

Physics of DNA: unravelling hidden abilities encoded in the structure of ‘the most important molecule’

(2010) Alexei A. Kornyshev   PHYSICAL CHEMISTRY CHEMICAL PHYSICS

A Computational Framework for Mechanical Response of Macromolecules: Application to the Salt Concentration Dependence of DNA Bendability

(2009) Liang Ma et al.   BIOPHYSICAL JOURNAL

Induction of autophagy by spermidine promotes longevity

(2009) Tobias Eisenberg et al.   NATURE CELL BIOLOGY

A universal description for the experimental behavior of salt-(in)dependent oligocation-induced DNA condensation

(2009) Nikolay Korolev et al.   NUCLEIC ACIDS RESEARCH

Structure of toroidal DNA collapsed inside the phage capsid

(2009) A. Leforestier et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Electric and electrophoretic inversion of the DNA charge in multivalent electrolytes

(2009) Binquan Luan et al.   Soft Matter

Physical Chemistry of DNA Viruses

(2008) Charles M. Knobler et al.   Annual Review of Physical Chemistry

Attractive Forces between Cation Condensed DNA Double Helices

(2008) Brian A. Todd et al.   BIOPHYSICAL JOURNAL

GROMACS 4:  Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation

(2008) Berk Hess et al.   Journal of Chemical Theory and Computation

Determination of Alkali and Halide Monovalent Ion Parameters for Use in Explicitly Solvated Biomolecular Simulations

(2008) In Suk Joung et al.   JOURNAL OF PHYSICAL CHEMISTRY B

DNA Attraction in Monovalent and Divalent Electrolytes

(2008) Binquan Luan et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Molecular Dynamics Simulation of Multivalent-Ion Mediated Attraction between DNA Molecules

(2008) Liang Dai et al.   PHYSICAL REVIEW LETTERS