TcoF-DB v2: update of the database of human and mouse transcription co-factors and transcription factor interactions

Enrichr: a comprehensive gene set enrichment analysis web server 2016 update

(2016) Maxim V. Kuleshov et al.   NUCLEIC ACIDS RESEARCH

Batf2/Irf1 Induces Inflammatory Responses in Classically Activated Macrophages, Lipopolysaccharides, and Mycobacterial Infection

(2015) Sugata Roy et al.   JOURNAL OF IMMUNOLOGY

Redefining the transcriptional regulatory dynamics of classically and alternatively activated macrophages by deepCAGE transcriptomics

(2015) Sugata Roy et al.   NUCLEIC ACIDS RESEARCH

Mouse genome database 2016

(2015) Carol J. Bult et al.   NUCLEIC ACIDS RESEARCH

KEGG as a reference resource for gene and protein annotation

(2015) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

The UCSC Genome Browser database: 2016 update

(2015) Matthew L. Speir et al.   NUCLEIC ACIDS RESEARCH

HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models

(2015) Ivan V. Kulakovskiy et al.   NUCLEIC ACIDS RESEARCH

Expression Atlas update—an integrated database of gene and protein expression in humans, animals and plants

(2015) Robert Petryszak et al.   NUCLEIC ACIDS RESEARCH

The Reactome pathway Knowledgebase

(2015) Antonio Fabregat et al.   NUCLEIC ACIDS RESEARCH

JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles

(2015) Anthony Mathelier et al.   NUCLEIC ACIDS RESEARCH

The Pfam protein families database: towards a more sustainable future

(2015) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

DisGeNET: a discovery platform for the dynamical exploration of human diseases and their genes

(2015) J. Pinero et al.   Database-The Journal of Biological Databases and Curation

The Molecular Signatures Database Hallmark Gene Set Collection

(2015) Arthur Liberzon et al.   Cell Systems

A promoter-level mammalian expression atlas

(2014)   NATURE

Interactive visualization and analysis of large-scale sequencing datasets using ZENBU

(2014) Jessica Severin et al.   NATURE BIOTECHNOLOGY

Gene Ontology Consortium: going forward

(2014)   NUCLEIC ACIDS RESEARCH

The BioGRID interaction database: 2015 update

(2014) Andrew Chatr-aryamontri et al.   NUCLEIC ACIDS RESEARCH

AnimalTFDB 2.0: a resource for expression, prediction and functional study of animal transcription factors

(2014) Hong-Mei Zhang et al.   NUCLEIC ACIDS RESEARCH

UniProt: a hub for protein information

(2014)   NUCLEIC ACIDS RESEARCH

TFcheckpoint: a curated compendium of specific DNA-binding RNA polymerase II transcription factors

(2013) Konika Chawla et al.   BIOINFORMATICS

Transcriptional Regulation and Its Misregulation in Disease

(2013) Tong Ihn Lee et al.   CELL

Simplified Method for Predicting a Functional Class of Proteins in Transcription Factor Complexes

(2013) Marek J. Piatek et al.   PLoS One

High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis

(2012) Steve Eyre et al.   NATURE GENETICS

Metazoan promoters: emerging characteristics and insights into transcriptional regulation

(2012) Boris Lenhard et al.   NATURE REVIEWS GENETICS

Factorbook.org: a Wiki-based database for transcription factor-binding data generated by the ENCODE consortium

(2012) J. Wang et al.   NUCLEIC ACIDS RESEARCH

In Silico discovery of transcription factors as potential diagnostic biomarkers of ovarian cancer

(2011) Mandeep Kaur et al.   BMC Systems Biology

MINT, the molecular interaction database: 2012 update

(2011) Luana Licata et al.   NUCLEIC ACIDS RESEARCH

Simplified Method to Predict Mutual Interactions of Human Transcription Factors Based on Their Primary Structure

(2011) Sebastian Schmeier et al.   PLoS One

An Atlas of Combinatorial Transcriptional Regulation in Mouse and Man

(2010) Timothy Ravasi et al.   CELL

TcoF-DB: dragon database for human transcription co-factors and transcription factor interacting proteins

(2010) U. Schaefer et al.   NUCLEIC ACIDS RESEARCH

Deciphering the transcriptional circuitry of microRNA genes expressed during human monocytic differentiation

(2009) Sebastian Schmeier et al.   BMC GENOMICS

The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line

(2009) Harukazu Suzuki et al.   NATURE GENETICS

A census of human transcription factors: function, expression and evolution

(2009) Juan M. Vaquerizas et al.   NATURE REVIEWS GENETICS

Investigation of candidate polymorphisms and disease activity in rheumatoid arthritis patients on methotrexate

(2009) Y. C. Lee et al.   RHEUMATOLOGY

Early and long-standing rheumatoid arthritis: distinct molecular signatures identified by gene-expression profiling in synovia

(2009) Thierry Lequerré et al.   ARTHRITIS RESEARCH & THERAPY

TFCat: the curated catalog of mouse and human transcription factors

(2009) Debra L Fulton et al.   GENOME BIOLOGY

Key regulatory molecules of cartilage destruction in rheumatoid arthritis: an in vitro study

(2008) Kristin Andreas et al.   ARTHRITIS RESEARCH & THERAPY

A Large-Scale Rheumatoid Arthritis Genetic Study Identifies Association at Chromosome 9q33.2

(2008) Monica Chang et al.   PLoS Genetics