- Home
- Publications
- Publication Search
- Publication Details
Title
NAPS: Network Analysis of Protein Structures
Authors
Keywords
-
Journal
NUCLEIC ACIDS RESEARCH
Volume 44, Issue W1, Pages W375-W382
Publisher
Oxford University Press (OUP)
Online
2016-05-06
DOI
10.1093/nar/gkw383
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Molecular Dynamics Simulations and Structural Network Analysis of c-Abl and c-Src Kinase Core Proteins: Capturing Allosteric Mechanisms and Communication Pathways from Residue Centrality
- (2015) Amanda Tse et al. Journal of Chemical Information and Modeling
- Modeling proteins as residue interaction networks
- (2015) Rajdeep Grewal et al. PROTEIN AND PEPTIDE LETTERS
- CyToStruct: Augmenting the Network Visualization of Cytoscape with the Power of Molecular Viewers
- (2015) Sergey Nepomnyachiy et al. STRUCTURE
- The construction of an amino acid network for understanding protein structure and function
- (2014) Wenying Yan et al. AMINO ACIDS
- ConSole: using modularity of Contact maps to locate Solenoid domains in protein structures
- (2014) Thomas Hrabe et al. BMC BIOINFORMATICS
- A graph theoretic approach to utilizing protein structure to identify non-random somatic mutations
- (2014) Gregory A Ryslik et al. BMC BIOINFORMATICS
- Identifying tandem Ankyrin repeats in protein structures
- (2014) Broto Chakrabarty et al. BMC BIOINFORMATICS
- PyInteraph: A Framework for the Analysis of Interaction Networks in Structural Ensembles of Proteins
- (2014) Matteo Tiberti et al. Journal of Chemical Information and Modeling
- Computational Modeling of Allosteric Regulation in the Hsp90 Chaperones: A Statistical Ensemble Analysis of Protein Structure Networks and Allosteric Communications
- (2014) Kristin Blacklock et al. PLoS Computational Biology
- PRIGSA: Protein repeat identification by graph spectral analysis
- (2014) Broto Chakrabarty et al. Journal of Bioinformatics and Computational Biology
- JSmol and the Next-Generation Web-Based Representation of 3D Molecular Structure as Applied toProteopedia
- (2013) Robert M. Hanson et al. ISRAEL JOURNAL OF CHEMISTRY
- Protein structure networks
- (2012) L. H. Greene Briefings in Functional Genomics
- Protein Contact Networks: An Emerging Paradigm in Chemistry
- (2012) L. Di Paola et al. CHEMICAL REVIEWS
- Proteins as Sponges: A Statistical Journey along Protein Structure Organization Principles
- (2012) Luisa Di Paola et al. Journal of Chemical Information and Modeling
- xPyder: A PyMOL Plugin To Analyze Coupled Residues and Their Networks in Protein Structures.
- (2012) Marco Pasi et al. Journal of Chemical Information and Modeling
- CMWeb: an interactive on-line tool for analysing residue-residue contacts and contact prediction methods
- (2012) D. Kozma et al. NUCLEIC ACIDS RESEARCH
- RING: networking interacting residues, evolutionary information and energetics in protein structures
- (2011) A. J. M. Martin et al. BIOINFORMATICS
- CMView: Interactive contact map visualization and analysis
- (2011) C. Vehlow et al. BIOINFORMATICS
- Analyzing and visualizing residue networks of protein structures
- (2011) Nadezhda T. Doncheva et al. TRENDS IN BIOCHEMICAL SCIENCES
- Universality in Protein Residue Networks
- (2010) Ernesto Estrada BIOPHYSICAL JOURNAL
- Optimal contact definition for reconstruction of Contact Maps
- (2010) Jose M Duarte et al. BMC BIOINFORMATICS
- AMINONET– a tool to construct and visualize amino acid networks, and to calculate topological parameters
- (2010) Md. Aftabuddin et al. JOURNAL OF APPLIED CRYSTALLOGRAPHY
- Understanding Protein Structure from a Percolation Perspective
- (2009) Dhruba Deb et al. BIOPHYSICAL JOURNAL
- Intra and Inter-Molecular Communications Through Protein Structure Network
- (2009) Saraswathi Vishveshwara et al. CURRENT PROTEIN & PEPTIDE SCIENCE
- Analysis of protein folds using protein contact networks
- (2009) Pankaj Barah et al. PRAMANA-JOURNAL OF PHYSICS
- Variations in Clique and Community Patterns in Protein Structures during Allosteric Communication: Investigation of Dynamically Equilibrated Structures of Methionyl tRNA Synthetase Complexes†
- (2008) Amit Ghosh et al. BIOCHEMISTRY
- Insights into Protein–DNA Interactions through Structure Network Analysis
- (2008) R. Sathyapriya et al. PLoS Computational Biology
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started