Transcription-coupled DNA supercoiling dictates the chromosomal arrangement of bacterial genes

Upstream Binding of Idling RNA Polymerase Modulates Transcription Initiation from a Nearby Promoter

(2015) Veneta Gerganova et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Role of Global and Local Topology in the Regulation of Gene Expression in Streptococcus pneumoniae

(2014) María-José Ferrándiz et al.   PLoS One

Torsion-Mediated Interaction between Adjacent Genes

(2014) Sam Meyer et al.   PLoS Computational Biology

Role of chaperones and ATP synthase in DNA gyrase reactivation in Escherichia coli stationary-phase cells after nutrient addition

(2014) Alejandra Gutiérrez-Estrada et al.   SpringerPlus

Co-operative roles for DNA supercoiling and nucleoid-associated proteins in the regulation of bacterial transcription

(2013) Charles J. Dorman   BIOCHEMICAL SOCIETY TRANSACTIONS

DNA thermodynamic stability and supercoil dynamics determine the gene expression program during the bacterial growth cycle

(2013) Patrick Sobetzko et al.   Molecular BioSystems

Dependence of transcription-coupled DNA supercoiling on promoter strength in Escherichia coli topoisomerase I deficient strains

(2012) Xiaoduo Zhi et al.   GENE

Gene expression profile of early in vitro biofilms of Streptococcus pneumoniae

(2012) Mukesh Kumar Yadav et al.   MICROBIOLOGY AND IMMUNOLOGY

The nucleoid-associated proteins H-NS and FIS modulate the DNA supercoiling response of the pel genes, the major virulence factors in the plant pathogen bacterium Dickeya dadantii

(2012) Zghidi-Abouzid Ouafa et al.   NUCLEIC ACIDS RESEARCH

DoriC 5.0: an updated database of oriC regions in both bacterial and archaeal genomes

(2012) Feng Gao et al.   NUCLEIC ACIDS RESEARCH

Analog regulation of metabolic demand

(2011) Nikolaus Sonnenschein et al.   BMC Systems Biology

Gene order and chromosome dynamics coordinate spatiotemporal gene expression during the bacterial growth cycle

(2011) P. Sobetzko et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Coordination of genomic structure and transcription by the main bacterial nucleoid-associated protein HU

(2009) Michael Berger et al.   EMBO REPORTS

Dissecting the logical types of network control in gene expression profiles

(2008) Carsten Marr et al.   BMC Systems Biology

The functional response of upstream DNA to dynamic supercoiling in vivo

(2008) Fedor Kouzine et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY