Nucleosome-free DNA regions differentially affect distant communication in chromatin

Topological Polymorphism of the Two-Start Chromatin Fiber

(2015) Davood Norouzi et al.   BIOPHYSICAL JOURNAL

Chromatin Fibers Are Formed by Heterogeneous Groups of Nucleosomes In Vivo

(2015) Maria Aurelia Ricci et al.   CELL

The chromatin fiber: multiscale problems and approaches

(2015) Gungor Ozer et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Nucleosome positioning and composition modulate in silico chromatin flexibility

(2015) N Clauvelin et al.   JOURNAL OF PHYSICS-CONDENSED MATTER

Affinity, stoichiometry and cooperativity of heterochromatin protein 1 (HP1) binding to nucleosomal arrays

(2015) Vladimir B Teif et al.   JOURNAL OF PHYSICS-CONDENSED MATTER

Reconfiguration of nucleosome-depleted regions at distal regulatory elements accompanies DNA methylation of enhancers and insulators in cancer

(2014) Phillippa C. Taberlay et al.   GENOME RESEARCH

Chromatin fiber polymorphism triggered by variations of DNA linker lengths

(2014) R. Collepardo-Guevara et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Chromatin and DNA sequences in defining promoters for transcription initiation

(2013) Ferenc Müller et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Nucleosome-free Region Dominates Histone Acetylation in Targeting SWR1 to Promoters for H2A.Z Replacement

(2013) Anand Ranjan et al.   CELL

The Hierarchy of the 3D Genome

(2013) Johan H. Gibcus et al.   MOLECULAR CELL

Topology of mammalian developmental enhancers and their regulatory landscapes

(2013) Wouter de Laat et al.   NATURE

Chromatin and epigenetic features of long-range gene regulation

(2013) N. Harmston et al.   NUCLEIC ACIDS RESEARCH

DNA sequence-dependent mechanics and protein-assisted bending in repressor-mediated loop formation

(2013) James Q Boedicker et al.   PHYSICAL BIOLOGY

Short nucleosome repeats impose rotational modulations on chromatin fibre folding

(2012) Sarah J Correll et al.   EMBO JOURNAL

Internucleosomal Interactions Mediated by Histone Tails Allow Distant Communication in Chromatin

(2012) Olga I. Kulaeva et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Enhancer and promoter interactions—long distance calls

(2011) Ivan Krivega et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Toward Convergence of Experimental Studies and Theoretical Modeling of the Chromatin Fiber

(2011) Tamar Schlick et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Histone Depletion Facilitates Chromatin Loops on the Kilobasepair Scale

(2010) Philipp M. Diesinger et al.   BIOPHYSICAL JOURNAL

How stiff is DNA?

(2009) Guohui Zheng et al.   PHYSICAL CHEMISTRY CHEMICAL PHYSICS

Hydrodynamic Studies on Defined Heterochromatin Fragments Support a 30-nm Fiber Having Six Nucleosomes per Turn

(2008) Rodolfo Ghirlando et al.   JOURNAL OF MOLECULAR BIOLOGY

Nucleosome repeat length and linker histone stoichiometry determine chromatin fiber structure

(2008) Andrew Routh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transcription and Chromatin Organization of a Housekeeping Gene Cluster Containing an Integrated β-Globin Locus Control Region

(2008) Daan Noordermeer et al.   PLoS Genetics