High-throughput identification of C/D box snoRNA targets with CLIP and RiboMeth-seq
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Title
High-throughput identification of C/D box snoRNA targets with CLIP and RiboMeth-seq
Authors
Keywords
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Journal
NUCLEIC ACIDS RESEARCH
Volume -, Issue -, Pages gkw1321
Publisher
Oxford University Press (OUP)
Online
2016-12-20
DOI
10.1093/nar/gkw1321
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Note: Only part of the references are listed.- Global Mapping of Human RNA-RNA Interactions
- (2016) Eesha Sharma et al. MOLECULAR CELL
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- Defects in tRNA Anticodon Loop 2′-O-Methylation Are Implicated in Nonsyndromic X-Linked Intellectual Disability due to Mutations inFTSJ1
- (2015) Michael P. Guy et al. HUMAN MUTATION
- Quantifying the strength of miRNA–target interactions
- (2015) Jeremie Breda et al. METHODS
- Accurate transcriptome-wide prediction of microRNA targets and small interfering RNA off-targets with MIRZA-G
- (2015) Rafal Gumienny et al. NUCLEIC ACIDS RESEARCH
- RMBase: a resource for decoding the landscape of RNA modifications from high-throughput sequencing data
- (2015) Wen-Ju Sun et al. NUCLEIC ACIDS RESEARCH
- Profiling of Ribose Methylations in RNA by High-Throughput Sequencing
- (2014) Ulf Birkedal et al. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
- The Pivotal Regulatory Landscape of RNA Modifications
- (2014) Sheng Li et al. Annual Review of Genomics and Human Genetics
- Emerging Roles of RNA Modification: m 6 A and U-Tail
- (2014) Mihye Lee et al. CELL
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- (2014) Schraga Schwartz et al. CELL
- Evaluation of Data-Dependent and -Independent Mass Spectrometric Workflows for Sensitive Quantification of Proteins and Phosphorylation Sites
- (2014) Manuel Bauer et al. JOURNAL OF PROTEOME RESEARCH
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- (2014) Stefanie Grosswendt et al. MOLECULAR CELL
- The Coilin Interactome Identifies Hundreds of Small Noncoding RNAs that Traffic through Cajal Bodies
- (2014) Martin Machyna et al. MOLECULAR CELL
- The UCSC Genome Browser database: 2015 update
- (2014) Kate R. Rosenbloom et al. NUCLEIC ACIDS RESEARCH
- Ensembl 2015
- (2014) Fiona Cunningham et al. NUCLEIC ACIDS RESEARCH
- Mapping the Human miRNA Interactome by CLASH Reveals Frequent Noncanonical Binding
- (2013) Aleksandra Helwak et al. CELL
- N6-methyladenosine-dependent regulation of messenger RNA stability
- (2013) Xiao Wang et al. NATURE
- Insights into snoRNA biogenesis and processing from PAR-CLIP of snoRNA core proteins and small RNA sequencing
- (2013) Shivendra Kishore et al. GENOME BIOLOGY
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
- Human intron-encoded Alu RNAs are processed and packaged into Wdr79-associated nucleoplasmic box H/ACA RNPs
- (2012) B. E. Jady et al. GENES & DEVELOPMENT
- Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq
- (2012) Dan Dominissini et al. NATURE
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- RTL-P: a sensitive approach for detecting sites of 2′-O-methylation in RNA molecules
- (2012) Zhi-Wei Dong et al. NUCLEIC ACIDS RESEARCH
- Genome-wide Analysis of Pre-mRNA 3′ End Processing Reveals a Decisive Role of Human Cleavage Factor I in the Regulation of 3′ UTR Length
- (2012) Georges Martin et al. Cell Reports
- The birth of the Epitranscriptome: deciphering the function of RNA modifications
- (2012) Yogesh Saletore et al. GENOME BIOLOGY
- Box C/D snoRNP catalysed methylation is aided by additional pre-rRNA base-pairing
- (2011) Robert Willem van Nues et al. EMBO JOURNAL
- Cross-linking, ligation, and sequencing of hybrids reveals RNA-RNA interactions in yeast
- (2011) G. Kudla et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- PLEXY: efficient target prediction for box C/D snoRNAs
- (2010) Stephanie Kehr et al. BIOINFORMATICS
- Transcriptome-wide Identification of RNA-Binding Protein and MicroRNA Target Sites by PAR-CLIP
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- CLIPZ: a database and analysis environment for experimentally determined binding sites of RNA-binding proteins
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- Mining small RNA sequencing data: a new approach to identify small nucleolar RNAs in Arabidopsis
- (2009) Ho-Ming Chen et al. NUCLEIC ACIDS RESEARCH
- RNAplex: a fast tool for RNA–RNA interaction search
- (2008) Hakim Tafer et al. BIOINFORMATICS
- Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells
- (2008) R. D. Morin et al. GENOME RESEARCH
- GtRNAdb: a database of transfer RNA genes detected in genomic sequence
- (2008) P. P. Chan et al. NUCLEIC ACIDS RESEARCH
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