Host shifts enhance diversification of ectomycorrhizal fungi: diversification rate analysis of the ectomycorrhizal fungal genera Strobilomyces and Afroboletus with an 80-gene phylogeny

Into and out of the tropics: global diversification patterns in a hyperdiverse clade of ectomycorrhizal fungi

(2016) Brian P. Looney et al.   MOLECULAR ECOLOGY

High speciation rate at temperate latitudes explains unusual diversity gradients in a clade of ectomycorrhizal fungi

(2015) Santiago Sánchez-Ramírez et al.   EVOLUTION

Model Inadequacy and Mistaken Inferences of Trait-Dependent Speciation

(2015) Daniel L. Rabosky et al.   SYSTEMATIC BIOLOGY

Contrasting Diversity and Host Association of Ectomycorrhizal Basidiomycetes versus Root-Associated Ascomycetes in a Dipterocarp Rainforest

(2015) Hirotoshi Sato et al.   PLoS One

Coevolution and the Diversification of Life

(2014) David H. Hembry et al.   AMERICAN NATURALIST

Phylogenetic approaches for studying diversification

(2014) Hélène Morlon   ECOLOGY LETTERS

Molecular phylogenetic analyses redefine seven major clades and reveal 22 new generic clades in the fungal family Boletaceae

(2014) Gang Wu et al.   FUNGAL DIVERSITY

The Unsolved Challenge to Phylogenetic Correlation Tests for Categorical Characters

(2014) Wayne P. Maddison et al.   SYSTEMATIC BIOLOGY

Analysis and Visualization of Complex Macroevolutionary Dynamics: An Example from Australian Scincid Lizards

(2014) Daniel L. Rabosky et al.   SYSTEMATIC BIOLOGY

BAMMtools: an R package for the analysis of evolutionary dynamics on phylogenetic trees

(2014) Daniel L. Rabosky et al.   Methods in Ecology and Evolution

PEAR: a fast and accurate Illumina Paired-End reAd mergeR

(2013) J. Zhang et al.   BIOINFORMATICS

Exploring power and parameter estimation of the BiSSE method for analyzing species diversification

(2013) Matthew P Davis et al.   BMC EVOLUTIONARY BIOLOGY

Phylogenetic overview of the Boletineae

(2013) Mitchell E. Nuhn et al.   Fungal Biology

Practical innovations for high-throughput amplicon sequencing

(2013) Derek S Lundberg et al.   NATURE METHODS

Biogeography of ectomycorrhizal fungi associated with alders (Alnusspp.) in relation to biotic and abiotic variables at the global scale

(2013) Sergei Põlme et al.   NEW PHYTOLOGIST

Historical Biogeography and Diversification of Truffles in the Tuberaceae and Their Newly Identified Southern Hemisphere Sister Lineage

(2013) Gregory Bonito et al.   PLoS One

Two New Computational Methods for Universal DNA Barcoding: A Benchmark Using Barcode Sequences of Bacteria, Archaea, Animals, Fungi, and Land Plants

(2013) Akifumi S. Tanabe et al.   PLoS One

Diversification through multitrait evolution in a coevolving interaction

(2013) J. N. Thompson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Symbiosis catalyses niche expansion and diversification

(2013) J. B. Joy   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Testing for coevolutionary diversification: linking pattern with process

(2013) David M. Althoff et al.   TRENDS IN ECOLOGY & EVOLUTION

Mutualism with sea anemones triggered the adaptive radiation of clownfishes

(2012) Glenn Litsios et al.   BMC EVOLUTIONARY BIOLOGY

Phylogenetic estimation error can decrease the accuracy of species delimitation: a Bayesian implementation of the general mixed Yule-coalescent model

(2012) Noah M Reid et al.   BMC EVOLUTIONARY BIOLOGY

Modelling the global distribution of fungal species: new insights into microbial cosmopolitanism

(2012) Hirotoshi Sato et al.   MOLECULAR ECOLOGY

Scaling up: examining the macroecology of ectomycorrhizal fungi

(2012) PETER G. KENNEDY et al.   MOLECULAR ECOLOGY

Towards global patterns in the diversity and community structure of ectomycorrhizal fungi

(2012) LEHO TEDERSOO et al.   MOLECULAR ECOLOGY

Diversity and evolution of ectomycorrhizal host associations in the Sclerodermatineae (Boletales, Basidiomycota)

(2012) Andrew W. Wilson et al.   NEW PHYTOLOGIST

Mutualism with Plants Drives Primate Diversification

(2012) José M. Gómez et al.   SYSTEMATIC BIOLOGY

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Diversitree: comparative phylogenetic analyses of diversification in R

(2012) Richard G. FitzJohn   Methods in Ecology and Evolution

Ehrlich and Raven Revisited: Mechanisms Underlying Codiversification of Plants and Enemies

(2011) Niklas Janz   Annual Review of Ecology Evolution and Systematics

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

DEALING WITH INCOMPLETE TAXON SAMPLING AND DIVERSIFICATION OF A LARGE CLADE OF MUSHROOM-FORMING FUNGI

(2011) Martin Ryberg et al.   EVOLUTION

Kakusan4 and Aminosan: two programs for comparing nonpartitioned, proportional and separate models for combined molecular phylogenetic analyses of multilocus sequence data

(2011) AKIFUMI S. TANABE   Molecular Ecology Resources

Two species of Strobilomyces (Boletaceae, Boletales), S. seminudus and S. hongoi sp. nov. from Japan

(2011) Hirotoshi Sato et al.   MYCOLOGIA

Asynchronous origins of ectomycorrhizal clades of Agaricales

(2011) M. Ryberg et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Testing for Temporal Variation in Diversification Rates When Sampling is Incomplete and Nonrandom

(2011) Chad D. Brock et al.   SYSTEMATIC BIOLOGY

When Does Coevolution Promote Diversification?

(2010) Jeremy B. Yoder et al.   AMERICAN NATURALIST

Ecological opportunity and the origin of adaptive radiations

(2010) J. B. YODER et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Ongoing coevolution in mycorrhizal interactions

(2010) Jason D. Hoeksema   NEW PHYTOLOGIST

The Role of Animal Pollination in Plant Speciation: Integrating Ecology, Geography, and Genetics

(2009) Kathleen M. Kay et al.   Annual Review of Ecology Evolution and Systematics

EXTINCTION RATES SHOULD NOT BE ESTIMATED FROM MOLECULAR PHYLOGENIES

(2009) Daniel L. Rabosky   EVOLUTION

Out of the Palaeotropics? Historical biogeography and diversification of the cosmopolitan ectomycorrhizal mushroom family Inocybaceae

(2009) P. Brandon Matheny et al.   JOURNAL OF BIOGEOGRAPHY

Ectomycorrhizal lifestyle in fungi: global diversity, distribution, and evolution of phylogenetic lineages

(2009) Leho Tedersoo et al.   MYCORRHIZA

General latitudinal gradient of biodiversity is reversed in ectomycorrhizal fungi

(2009) Leho Tedersoo et al.   NEW PHYTOLOGIST

Funybase: a Fungal phylogenomic database

(2008) Sylvain Marthey et al.   BMC BIOINFORMATICS

PHYTOPHAGOUS INSECT–MICROBE MUTUALISMS AND ADAPTIVE EVOLUTIONARY DIVERSIFICATION

(2008) Eric M. Janson et al.   EVOLUTION

Reproductive isolation among cryptic species in the ectomycorrhizal genus Strobilomyces: Population-level CAPS marker-based genetic analysis

(2008) Hirotoshi Sato et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex

(2008) Micah Hamady et al.   NATURE METHODS

Strong host preference of ectomycorrhizal fungi in a Tasmanian wet sclerophyll forest as revealed by DNA barcoding and taxon-specific primers

(2008) Leho Tedersoo et al.   NEW PHYTOLOGIST

Community Complexity Drives Patterns of Natural Selection on a Chemical Defense of Brassica nigra

(2007) Richard A. Lankau et al.   AMERICAN NATURALIST

Molecular evidence for long distance dispersal across the Southern Hemisphere in the Ganoderma applanatum-australe species complex (Basidiomycota)

(2007) Jean-Marc Moncalvo et al.