Whole genome duplication in coast redwood (Sequoia sempervirens ) and its implications for explaining the rarity of polyploidy in conifers

A high frequency of allopolyploid speciation in the gymnospermous genusEphedraand its possible association with some biological and ecological features

(2016) Hui Wu et al.   MOLECULAR ECOLOGY

The Gnetales: Recent insights on their morphology, reproductive biology, chromosome numbers, biogeography, and divergence times

(2016) Stefanie M. Ickert-Bond et al.   Journal of Systematics and Evolution

Exploring Tree-Like and Non-Tree-Like Patterns Using Genome Sequences: An Example Using the Inbreeding Plant SpeciesArabidopsis thaliana(L.) Heynh

(2015) Noah W. M. Stenz et al.   SYSTEMATIC BIOLOGY

Early genome duplications in conifers and other seed plants

(2015) Z. Li et al.   Science Advances

Pushing the limits to tree height: could foliar water storage compensate for hydraulic constraints inSequoia sempervirens?

(2014) H. Roaki Ishii et al.   FUNCTIONAL ECOLOGY

Origin, inheritance, and gene regulatory consequences of genome dominance in polyploids

(2014) M. R. Woodhouse et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Norway spruce genome sequence and conifer genome evolution

(2013) Björn Nystedt et al.   NATURE

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

Slow but not low: genomic comparisons reveal slower evolutionary rate and higher dN/dS in conifers compared to angiosperms

(2012) Emmanuel Buschiazzo et al.   BMC EVOLUTIONARY BIOLOGY

Inference of Genome Duplications from Age Distributions Revisited

(2012) Kevin Vanneste et al.   MOLECULAR BIOLOGY AND EVOLUTION

Three genome-based phylogeny of Cupressaceae s.l.: Further evidence for the evolution of gymnosperms and Southern Hemisphere biogeography

(2012) Zu-Yu Yang et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Distribution of living Cupressaceae reflects the breakup of Pangea

(2012) K. Mao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Hemisphere-scale differences in conifer evolutionary dynamics

(2012) A. B. Leslie et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Proteinortho: Detection of (Co-)orthologs in large-scale analysis

(2011) Marcus Lechner et al.   BMC BIOINFORMATICS

Ancestral polyploidy in seed plants and angiosperms

(2011) Yuannian Jiao et al.   NATURE

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

BUCKy: Gene tree/species tree reconciliation with Bayesian concordance analysis

(2010) Bret R. Larget et al.   BIOINFORMATICS

Identifying the rooted species tree from the distribution of unrooted gene trees under the coalescent

(2010) Elizabeth S. Allman et al.   JOURNAL OF MATHEMATICAL BIOLOGY

Evolutionary consequences of autopolyploidy

(2010) Christian Parisod et al.   NEW PHYTOLOGIST

Origin and Early Evolution of Angiosperms

(2008) Douglas E. Soltis et al.   Annals of the New York Academy of Sciences

Multiple Paleopolyploidizations during the Evolution of the Compositae Reveal Parallel Patterns of Duplicate Gene Retention after Millions of Years

(2008) M. S. Barker et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genome size is a strong predictor of cell size and stomatal density in angiosperms

(2008) Jeremy M. Beaulieu et al.   NEW PHYTOLOGIST