Transcriptome-wide interrogation of RNA secondary structure in living cells with icSHAPE
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Title
Transcriptome-wide interrogation of RNA secondary structure in living cells with icSHAPE
Authors
Keywords
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Journal
Nature Protocols
Volume 11, Issue 2, Pages 273-290
Publisher
Springer Nature
Online
2016-01-15
DOI
10.1038/nprot.2016.011
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Note: Only part of the references are listed.- Structural imprints in vivo decode RNA regulatory mechanisms
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- (2014) J. Talkish et al. RNA
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