- Home
- Publications
- Publication Search
- Publication Details
Title
UMI-4C for quantitative and targeted chromosomal contact profiling
Authors
Keywords
-
Journal
NATURE METHODS
Volume 13, Issue 8, Pages 685-691
Publisher
Springer Nature
Online
2016-07-05
DOI
10.1038/nmeth.3922
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Chromatin architecture reorganization during stem cell differentiation
- (2015) Jesse R. Dixon et al. NATURE
- Integrative analysis of 111 reference human epigenomes
- (2015) Anshul Kundaje et al. NATURE
- Mapping long-range promoter contacts in human cells with high-resolution capture Hi-C
- (2015) Borbala Mifsud et al. NATURE GENETICS
- Chromatin extrusion explains key features of loop and domain formation in wild-type and engineered genomes
- (2015) Adrian L. Sanborn et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Capture Hi-C identifies the chromatin interactome of colorectal cancer risk loci
- (2015) Roland Jäger et al. Nature Communications
- A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
- (2014) Suhas S.P. Rao et al. CELL
- Statistical confidence estimation for Hi-C data reveals regulatory chromatin contacts
- (2014) F. Ay et al. GENOME RESEARCH
- Analysis of hundreds of cis-regulatory landscapes at high resolution in a single, high-throughput experiment
- (2014) Jim R Hughes et al. NATURE GENETICS
- Targeted Chromatin Capture (T2C): a novel high resolution high throughput method to detect genomic interactions and regulatory elements
- (2014) Petros Kolovos et al. Epigenetics & Chromatin
- Genome-wide Chromatin Interactions of the Nanog Locus in Pluripotency, Differentiation, and Reprogramming
- (2013) Effie Apostolou et al. Cell Stem Cell
- The pluripotent genome in three dimensions is shaped around pluripotency factors
- (2013) Elzo de Wit et al. NATURE
- Multiplexed chromosome conformation capture sequencing for rapid genome-scale high-resolution detection of long-range chromatin interactions
- (2013) Ralph Stadhouders et al. Nature Protocols
- HiCNorm: removing biases in Hi-C data via Poisson regression
- (2012) Ming Hu et al. BIOINFORMATICS
- Mutation of the receptor tyrosine phosphatase PTPRC (CD45) in T-cell acute lymphoblastic leukemia
- (2012) M. Porcu et al. BLOOD
- Primer-BLAST: A tool to design target-specific primers for polymerase chain reaction
- (2012) Jian Ye et al. BMC BIOINFORMATICS
- Three-Dimensional Folding and Functional Organization Principles of the Drosophila Genome
- (2012) Tom Sexton et al. CELL
- Combinatorial Assembly of Developmental Stage-Specific Enhancers Controls Gene Expression Programs during Human Erythropoiesis
- (2012) Jian Xu et al. DEVELOPMENTAL CELL
- A decade of 3C technologies: insights into nuclear organization
- (2012) E. de Wit et al. GENES & DEVELOPMENT
- Determining long-range chromatin interactions for selected genomic sites using 4C-seq technology: From fixation to computation
- (2012) Erik Splinter et al. METHODS
- An expansive human regulatory lexicon encoded in transcription factor footprints
- (2012) Shane Neph et al. NATURE
- The long-range interaction landscape of gene promoters
- (2012) Amartya Sanyal et al. NATURE
- The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity
- (2012) Jordi Barretina et al. NATURE
- Topological domains in mammalian genomes identified by analysis of chromatin interactions
- (2012) Jesse R. Dixon et al. NATURE
- Spatial partitioning of the regulatory landscape of the X-inactivation centre
- (2012) Elphège P. Nora et al. NATURE
- Robust 4C-seq data analysis to screen for regulatory DNA interactions
- (2012) Harmen J G van de Werken et al. NATURE METHODS
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Polycomb-Dependent Regulatory Contacts between Distant Hox Loci in Drosophila
- (2011) Frédéric Bantignies et al. CELL
- The inactive X chromosome adopts a unique three-dimensional conformation that is dependent on Xist RNA
- (2011) E. Splinter et al. GENES & DEVELOPMENT
- Diverse gene reprogramming events occur in the same spatial clusters of distal regulatory elements
- (2011) O. Hakim et al. GENOME RESEARCH
- Mapping and analysis of chromatin state dynamics in nine human cell types
- (2011) Jason Ernst et al. NATURE
- Probabilistic modeling of Hi-C contact maps eliminates systematic biases to characterize global chromosomal architecture
- (2011) Eitan Yaffe et al. NATURE GENETICS
- Counting absolute numbers of molecules using unique molecular identifiers
- (2011) Teemu Kivioja et al. NATURE METHODS
- Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
- (2009) E. Lieberman-Aiden et al. SCIENCE
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now