Whole Genome Sequencing Reveals High Genetic Diversity, Diverse Repertoire of Virulence-Associated Genes and Limited Antibiotic Resistance Genes among Commensal Escherichia coli from Food Animals in Uganda

The Klebsiella pneumoniae ter Operon Enhances Stress Tolerance

(2023) Sophia Mason et al.   INFECTION AND IMMUNITY

Antimicrobial Usage by Small-Scale Commercial Poultry Farmers in Mid-Western District of Masindi Uganda: Patterns, Public Health Implications, and Antimicrobial Resistance of E. coli

(2023) Majalija Samuel et al.   Veterinary Medicine International

Global burden of bacterial antimicrobial resistance in 2019: a systematic analysis

(2022) Christopher JL Murray et al.   LANCET

Diarrhoeagenic Escherichia coli isolated from children with acute diarrhoea at Rakai hospital, Southern Uganda

(2022) Fredrick Masiga et al.   African Health Sciences

Gut Commensal Escherichia coli, a High-Risk Reservoir of Transferable Plasmid-Mediated Antimicrobial Resistance Traits

(2022) Mahmoud Mohamed Tawfick et al.   Infection and Drug Resistance

Population genomics of Escherichia coli in livestock-keeping households across a rapidly developing urban landscape

(2022) Dishon M. Muloi et al.   Nature Microbiology

Use of Large-Scale Genomics to Identify the Role of Animals and Foods as Potential Sources of Extraintestinal Pathogenic Escherichia coli That Cause Human Illness

(2022) Lucas Harrison et al.   Foods

Escherichia coli in different animal feces: phylotypes and virulence genes

(2022) Emre Karakaya et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Emergence and Dissemination of Extraintestinal Pathogenic High-Risk International Clones of Escherichia coli

(2022) Béla Kocsis et al.   Life-Basel

One health clones of multidrug-resistant Escherichia coli carried by synanthropic animals in Brazil

(2022) Elder Sano et al.   One Health

High Risk Clone: A Proposal of Criteria Adapted to the One Health Context with Application to Enterotoxigenic Escherichia coli in the Pig Population

(2021) Maud de Lagarde et al.   Antibiotics-Basel

A plasmid locus associated with Klebsiella clinical infections encodes a microbiome-dependent gut fitness factor

(2021) Jay Vornhagen et al.   PLoS Pathogens

Antimicrobial Usage in Commercial and Domestic Poultry Farming in Two Communities in the Ashanti Region of Ghana

(2021) Ellis Kobina Paintsil et al.   Antibiotics-Basel

Whole-genome sequencing analysis of uncommon Shiga toxin-producing Escherichia coli from cattle: Virulence gene profiles, antimicrobial resistance predictions, and identification of novel O-serogroups

(2021) Xinyang Huang et al.   FOOD MICROBIOLOGY

ResFinder 4.0 for predictions of phenotypes from genotypes

(2020) Valeria Bortolaia et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Escherichia coli as a Multifaceted Pathogenic and Versatile Bacterium

(2020) Vânia Santos Braz et al.   Frontiers in Cellular and Infection Microbiology

Data on antimicrobial use in livestock: Lessons from Uganda

(2020) Orsolya Mikecz et al.   One Health

β-Lactamases and β-Lactamase Inhibitors in the 21st Century

(2019) Catherine L. Tooke et al.   JOURNAL OF MOLECULAR BIOLOGY

Development of a Web Tool for Escherichia coli Subtyping Based on fimH Alleles

(2017) Louise Roer et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Whole-Genome Analysis of Antimicrobial-Resistant and Extraintestinal Pathogenic Escherichia coli in River Water

(2016) Ryota Gomi et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The Bacterial Mobile Resistome Transfer Network Connecting the Animal and Human Microbiomes

(2016) Yongfei Hu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Proteomic analysis of the TerC interactome: Novel links to tellurite resistance and pathogenicity

(2016) L. Turkovicova et al.   Journal of Proteomics

Rapid and Easy In Silico Serotyping of Escherichia coli Isolates by Use of Whole-Genome Sequencing Data

(2015) Katrine G. Joensen et al.   JOURNAL OF CLINICAL MICROBIOLOGY

The livestock reservoir for antimicrobial resistance: a personal view on changing patterns of risks, effects of interventions and the way forward

(2015) F. M. Aarestrup   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Real-Time Whole-Genome Sequencing for Routine Typing, Surveillance, and Outbreak Detection of Verotoxigenic Escherichia coli

(2014) K. G. Joensen et al.   JOURNAL OF CLINICAL MICROBIOLOGY

On the middle ground between open source and commercial software - the case of the Newbler program

(2014) Alexander J Nederbragt   GENOME BIOLOGY

Updating benchtop sequencing performance comparison

(2013) Sebastian Jünemann et al.   NATURE BIOTECHNOLOGY

Pathogenic Escherichia coli Found in Sewage Treatment Plants and Environmental Waters

(2012) E. M. Anastasi et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Multilocus Sequence Typing of Total-Genome-Sequenced Bacteria

(2012) M. V. Larsen et al.   JOURNAL OF CLINICAL MICROBIOLOGY

The ClermontEscherichia coliphylo-typing method revisited: improvement of specificity and detection of new phylo-groups

(2012) Olivier Clermont et al.   Environmental Microbiology Reports

Btrim: A fast, lightweight adapter and quality trimming program for next-generation sequencing technologies

(2011) Yong Kong   GENOMICS

AmpC  -Lactamases

(2009) G. A. Jacoby   CLINICAL MICROBIOLOGY REVIEWS

Animal reservoirs for extended spectrum β-lactamase producers

(2008) A. Carattoli   CLINICAL MICROBIOLOGY AND INFECTION