Host genome integration and giant virus-induced reactivation of the virophage mavirus

Self-synthesizing transposons: unexpected key players in the evolution of viruses and defense systems

(2016) Mart Krupovic et al.   CURRENT OPINION IN MICROBIOLOGY

A classification system for virophages and satellite viruses

(2015) Mart Krupovic et al.   ARCHIVES OF VIROLOGY

Bandage: interactive visualization ofde novogenome assemblies: Fig. 1.

(2015) Ryan R. Wick et al.   BIOINFORMATICS

A novel group of diverse Polinton-like viruses discovered by metagenome analysis

(2015) Natalya Yutin et al.   BMC BIOLOGY

Provirophages in the Bigelowiella genome bear testimony to past encounters with giant viruses

(2015) Guillaume Blanc et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

In-depth study ofMollivirus sibericum, a new 30,000-y-old giant virus infectingAcanthamoeba

(2015) Matthieu Legendre et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Endogenous viruses: Connecting recent and ancient viral evolution

(2015) Pakorn Aiewsakun et al.   VIROLOGY

proovread : large-scale high-accuracy PacBio correction through iterative short read consensus

(2014) Thomas Hackl et al.   BIOINFORMATICS

Toward better understanding of artifacts in variant calling from high-coverage samples

(2014) Heng Li   BIOINFORMATICS

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Polintons: a hotbed of eukaryotic virus, transposon and plasmid evolution

(2014) Mart Krupovic et al.   NATURE REVIEWS MICROBIOLOGY

The virion of Cafeteria roenbergensis virus (CroV) contains a complex suite of proteins for transcription and DNA repair

(2014) Matthias G. Fischer et al.   VIROLOGY

QUAST: quality assessment tool for genome assemblies

(2013) Alexey Gurevich et al.   BIOINFORMATICS

Genome of Phaeocystis globosa virus PgV-16T highlights the common ancestry of the largest known DNA viruses infecting eukaryotes

(2013) S. Santini et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Provirophages and transpovirons as the diverse mobilome of giant viruses

(2012) C. Desnues et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A fast, lock-free approach for efficient parallel counting of occurrences of k-mers

(2011) Guillaume Marçais et al.   BIOINFORMATICS

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

A Virophage at the Origin of Large DNA Transposons

(2011) M. G. Fischer et al.   SCIENCE

Giant virus with a remarkable complement of genes infects marine zooplankton

(2010) M. G. Fischer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

JBrowse: A next-generation genome browser

(2009) M. E. Skinner et al.   GENOME RESEARCH

The virophage as a unique parasite of the giant mimivirus

(2008) Bernard La Scola et al.   NATURE