Past human expansions shaped the spatial pattern of Neanderthal ancestry

On the limits of fitting complex models of population history to f-statistics

(2023) Robert Maier et al.   eLife

Ancient mitochondrial diversity reveals population homogeneity in Neolithic Greece and identifies population dynamics along the Danubian expansion axis

(2022) Nuno M. Silva et al.   Scientific Reports

Projecting Ancient Ancestry in Modern-Day Arabians and Iranians: A Key Role of the Past Exposed Arabo-Persian Gulf on Human Migrations

(2021) Joana C Ferreira et al.   Genome Biology and Evolution

Different historical generation intervals in human populations inferred from Neanderthal fragment lengths and mutation signatures

(2021) Moisès Coll Macià et al.   Nature Communications

New insights into human immunity from ancient genomics

(2021) Gaspard Kerner et al.   CURRENT OPINION IN IMMUNOLOGY

Spatially explicit paleogenomic simulations support cohabitation with limited admixture between Bronze Age Central European populations

(2021) Jérémy Rio et al.   Communications Biology

Identifying and Interpreting Apparent Neanderthal Ancestry in African Individuals

(2020) Lu Chen et al.   CELL

The major genetic risk factor for severe COVID-19 is inherited from Neanderthals

(2020) Hugo Zeberg et al.   NATURE

The Spatial Signature of Introgression After a Biological Invasion With Hybridization

(2020) Claudio S. Quilodrán et al.   Frontiers in Ecology and Evolution

Limits of long-term selection against Neandertal introgression

(2019) Martin Petr et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Analyses of Neanderthal introgression suggest that Levantine and southern Arabian populations have a shared population history

(2019) Deven N. Vyas et al.   AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY

SPLATCHE3: simulation of serial genetic data under spatially explicit evolutionary scenarios including long-distance dispersal

(2019) Mathias Currat et al.   BIOINFORMATICS

Bayesian estimation of partial population continuity using ancient DNA and spatially explicit simulations

(2018) Nuno Miguel Silva et al.   Evolutionary Applications

Background selection and biased gene conversion affect more than 95% of the human genome and bias demographic inferences

(2018) Fanny Pouyet et al.   eLife

Multiple episodes of interbreeding between Neanderthal and modern humans

(2018) Fernando A. Villanea et al.   Nature Ecology & Evolution

The coefficient of determination R 2 and intra-class correlation coefficient from generalized linear mixed-effects models revisited and expanded

(2017) Shinichi Nakagawa et al.   Journal of the Royal Society Interface

Parallel palaeogenomic transects reveal complex genetic history of early European farmers

(2017) Mark Lipson et al.   NATURE

Tracing the peopling of the world through genomics

(2017) Rasmus Nielsen et al.   NATURE

A high-coverage Neandertal genome from Vindija Cave in Croatia

(2017) Kay Prüfer et al.   SCIENCE

Genetic Adaptation and Neandertal Admixture Shaped the Immune System of Human Populations

(2016) Hélène Quach et al.   CELL

Genetic surfing in human populations: from genes to genomes

(2016) Stephan Peischl et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Ancient gene flow from early modern humans into Eastern Neanderthals

(2016) Martin Kuhlwilm et al.   NATURE

Genomic insights into the origin of farming in the ancient Near East

(2016) Iosif Lazaridis et al.   NATURE

The genetic history of Ice Age Europe

(2016) Qiaomei Fu et al.   NATURE

Early farmers from across Europe directly descended from Neolithic Aegeans

(2016) Zuzana Hofmanová et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Strength of Selection against Neanderthal Introgression

(2016) Ivan Juric et al.   PLoS Genetics

Complex History of Admixture between Modern Humans and Neandertals

(2015) Benjamin Vernot et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Massive migration from the steppe was a source for Indo-European languages in Europe

(2015) Wolfgang Haak et al.   NATURE

Population genomics of Bronze Age Eurasia

(2015) Morten E. Allentoft et al.   NATURE

Evidence for archaic adaptive introgression in humans

(2015) Fernando Racimo et al.   NATURE REVIEWS GENETICS

Impact of range expansions on current human genomic diversity

(2014) Vitor Sousa et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Altitude adaptation in Tibetans caused by introgression of Denisovan-like DNA

(2014) Emilia Huerta-Sánchez et al.   NATURE

The genomic landscape of Neanderthal ancestry in present-day humans

(2014) Sriram Sankararaman et al.   NATURE

Resurrecting Surviving Neandertal Lineages from Modern Human Genomes

(2014) B. Vernot et al.   SCIENCE

Higher Levels of Neanderthal Ancestry in East Asians than in Europeans

(2013) Jeffrey D. Wall et al.   GENETICS

The complete genome sequence of a Neanderthal from the Altai Mountains

(2013) Kay Prüfer et al.   NATURE

Emergence of Agriculture in the Foothills of the Zagros Mountains of Iran

(2013) S. Riehl et al.   SCIENCE

Ancient DNA Reveals Key Stages in the Formation of Central European Mitochondrial Genetic Diversity

(2013) G. Brandt et al.   SCIENCE

A Haplotype at STAT2 Introgressed from Neanderthals and Serves as a Candidate of Positive Selection in Papua New Guinea

(2012) Fernando L. Mendez et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Influence of Admixture and Paleolithic Range Contractions on Current European Diversity Gradients

(2012) Miguel Arenas et al.   MOLECULAR BIOLOGY AND EVOLUTION

Effect of ancient population structure on the degree of polymorphism shared between modern human populations and ancient hominins

(2012) A. Eriksson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A High-Coverage Genome Sequence from an Archaic Denisovan Individual

(2012) M. Meyer et al.   SCIENCE

Consequences of Range Contractions and Range Shifts on Molecular Diversity

(2011) Miguel Arenas et al.   MOLECULAR BIOLOGY AND EVOLUTION

Strong reproductive isolation between humans and Neanderthals inferred from observed patterns of introgression

(2011) M. Currat et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genetic history of an archaic hominin group from Denisova Cave in Siberia

(2010) David Reich et al.   NATURE

A Draft Sequence of the Neandertal Genome

(2010) R. E. Green et al.   SCIENCE

Reconstructing Indian population history

(2009) David Reich et al.   NATURE

Worldwide Human Relationships Inferred from Genome-Wide Patterns of Variation

(2008) J. Z. Li et al.   SCIENCE