A test of genetic divergence of a bird existing in the Sichuan Basin and its surrounding mountain ranges

Geographic isolation and environmental heterogeneity contribute to genetic differentiation in Cephalotaxus oliveri

(2023) Hanjing Liu et al.   Ecology and Evolution

ADCY9 functions as a novel cancer suppressor gene in lung adenocarcinoma

(2023) Yijie Tang et al.   Journal of Thoracic Disease

The phylogeographic history of Megistostegium (Malvaceae) in the dry, spiny thickets of southwestern Madagascar using RAD‐seq data and ecological niche modeling

(2022) Margaret M. Hanes et al.   Ecology and Evolution

Comparative Transcriptome Analysis of Gayal (Bos frontalis), Yak (Bos grunniens), and Cattle (Bos taurus) Reveal the High-Altitude Adaptation

(2022) Jun Ma et al.   Frontiers in Genetics

Soil Microbial Communities Altered by Titanium Ions in Different Agroecosystems of Pitaya and Grape

(2022) Yuan He et al.   Microbiology Spectrum

Development of SSR markers and genetic diversity analysis based on RAD-seq technology among Chinese populations of Daphnia magna

(2022) Shengman Zhang et al.   MOLECULAR BIOLOGY REPORTS

The genomics of adaptation in birds

(2022) Leonardo Campagna et al.   CURRENT BIOLOGY

Genomic profiling of climate adaptation in Aedes aegypti along an altitudinal gradient in Nepal indicates non‐gradual expansion of the disease vector

(2022) Isabelle Marie Kramer et al.   MOLECULAR ECOLOGY

Genome-Wide Population Structure and Selection Signatures of Yunling Goat Based on RAD-seq

(2022) Yuming Chen et al.   Animals

Genomic data reveal contrasting patterns of divergence among island and mainland birds of the Eastern Mediterranean

(2022) Michaella Moysi et al.   IBIS

Evolutionary effects of geographic and climatic isolation between Rhododendron tsusiophyllum populations on the Izu Islands and mainland Honshu of Japan

(2021) Watanabe Yoichi et al.   HEREDITY

Genomic variation, population history and within-archipelago adaptation between island bird populations

(2021) Claudia A. Martin et al.   Royal Society Open Science

Ring distribution patterns—diversification or speciation? Comparative phylogeography of two small mammals in the mountains surrounding the Sichuan Basin

(2021) Yanqun Wang et al.   MOLECULAR ECOLOGY

The evolution of ancestral and species-specific adaptations in snowfinches at the Qinghai–Tibet Plateau

(2021) Yanhua Qu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ancestral polymorphisms shape the adaptive radiation of Metrosideros across the Hawaiian Islands

(2021) Jae Young Choi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phylogenomics and loci dropout patterns of deeply diverged Zodarion ant‐eating spiders suggest a high potential of RAD‐seq for genus‐level spider phylogenetics

(2021) David Ortiz et al.   CLADISTICS

Genomic history of the Italian population recapitulates key evolutionary dynamics of both Continental and Southern Europeans

(2020) Marco Sazzini et al.   BMC BIOLOGY

Population structure of Apodemus flavicollis and comparison to Apodemus sylvaticus in northern Poland based on RAD-seq

(2020) Maria Luisa Martin Cerezo et al.   BMC GENOMICS

Spatial variation in morphology of the White-browed Laughingthrush (Garrulax sannio) and its relationship with climate conditions in southern China

(2020) Longying Wen et al.   JOURNAL OF ORNITHOLOGY

Cryptic phylogeographic history sheds light on the generation of species diversity in sky‐island mountains

(2019) Kai He et al.   JOURNAL OF BIOGEOGRAPHY

Population genetic analysis of the domestic Bactrian camel in China by RAD‐seq

(2019) Chenmiao Liu et al.   Ecology and Evolution

WorldClim 2: new 1-km spatial resolution climate surfaces for global land areas

(2017) Stephen E. Fick et al.   INTERNATIONAL JOURNAL OF CLIMATOLOGY

Morphological differentiation in Asian honey bee (Apis cerana) populations in the basin and highlands of southwestern China

(2017) Xiangjie Zhu et al.   JOURNAL OF APICULTURAL RESEARCH

Genomic evidence for convergent evolution of a key trait underlying divergence in island birds

(2017) Elizabeth A. Cooper et al.   MOLECULAR ECOLOGY

Heterogeneous distributional responses to climate warming: evidence from rodents along a subtropical elevational gradient

(2017) Zhixin Wen et al.   BMC ECOLOGY

Characterization of novel microsatellite markers of the Emei Shan Liocichla using restriction site-associated DNA sequencing

(2017) Ailin Yang et al.   Avian Research

Development and characterization of novel microsatellite markers for the Common Pheasant (Phasianus colchicus) using RAD-seq

(2017) Biao Wang et al.   Avian Research

Population genetics analysis of the Nujiang catfish Creteuchiloglanis macropterus through a genome-wide single nucleotide polymorphisms resource generated by RAD-seq

(2017) Jingliang Kang et al.   Scientific Reports

Genetic signals of high-altitude adaptation in amphibians: a comparative transcriptome analysis

(2016) Weizhao Yang et al.   BMC GENETICS

Mobile hotspots and refugia of avian diversity in the mountains of south-west China under past and contemporary global climate change

(2016) Yongjie Wu et al.   JOURNAL OF BIOGEOGRAPHY

Genomic analysis of snub-nosed monkeys (Rhinopithecus) identifies genes and processes related to high-altitude adaptation

(2016) Li Yu et al.   NATURE GENETICS

Integrative taxonomy of the Plain-backed Thrush (Zoothera mollissima) complex (Aves, Turdidae) reveals cryptic species, including a new species

(2016) Per Alström et al.   Avian Research

Isolation by environment in White-breasted Nuthatches (Sitta carolinensis) of the Madrean Archipelago sky islands: a landscape genomics approach

(2015) Joseph D. Manthey et al.   MOLECULAR ECOLOGY

The complete mitochondrial genome of the white-browed laughingthrush Garrulax sannio (Passeriformes: Leiothrichidae)

(2015) Longying Wen et al.   Mitochondrial DNA Part A

FactoMineR: AnRPackage for Multivariate Analysis

(2015) Sébastien Lê et al.   Journal of Statistical Software

Genetic diversity analysis of Perinereis aibuhitensis based on ISSR and SRAP markers of Chinese coast populations

(2014) Fei Liu et al.   BIOCHEMICAL SYSTEMATICS AND ECOLOGY

Sky islands of southwest China. I: an overview of phylogeographic patterns

(2014) Kai He et al.   CHINESE SCIENCE BULLETIN

Correction: An Effort to Use Human-Based Exome Capture Methods to Analyze Chimpanzee and Macaque Exomes

(2014) Xin Jin et al.   PLoS One

Comparative genomics reveals insights into avian genome evolution and adaptation

(2014) G. Zhang et al.   SCIENCE

Ten years of next-generation sequencing technology

(2014) Erwin L. van Dijk et al.   TRENDS IN GENETICS

Where is positional uncertainty a problem for species distribution modelling?

(2013) Babak Naimi et al.   ECOGRAPHY

Next-Generation Sequencing: Methodology and Application

(2013) Ayman Grada et al.   JOURNAL OF INVESTIGATIVE DERMATOLOGY

Environmental gradients predict the genetic population structure of a coral reef fish in the Red Sea

(2013) Gerrit B. Nanninga et al.   MOLECULAR ECOLOGY

Inferring Phylogeny and Introgression using RADseq Data: An Example from Flowering Plants (Pedicularis: Orobanchaceae)

(2013) Deren A. R. Eaton et al.   SYSTEMATIC BIOLOGY

Genomic Sequence Diversity and Population Structure of Saccharomyces cerevisiae Assessed by RAD-seq

(2013) Gareth A. Cromie et al.   G3-Genes Genomes Genetics

clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters

(2012) Guangchuang Yu et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Inference of Population Splits and Mixtures from Genome-Wide Allele Frequency Data

(2012) Joseph K. Pickrell et al.   PLoS Genetics

Paired-end RAD-seq for de novo assembly and marker design without available reference

(2011) Eva-Maria Willing et al.   BIOINFORMATICS

Lineage diversification and historical demography of a montane bird Garrulax elliotii - implications for the Pleistocene evolutionary history of the eastern Himalayas

(2011) Yanhua Qu et al.   BMC EVOLUTIONARY BIOLOGY

Applications of next-generation sequencing to phylogeography and phylogenetics

(2011) John E. McCormack et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Analysis of the genetic structure of Tuvinian short-fat-tailed sheep populations with the use of the ISSR-PCR method

(2011) Yu. A. Stolpovsky et al.   RUSSIAN JOURNAL OF GENETICS

GCTA: A Tool for Genome-wide Complex Trait Analysis

(2010) Jian Yang et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Using AFLP markers and the Geneland program for the inference of population genetic structure

(2010) GILLES GUILLOT et al.   Molecular Ecology Resources

Plant recolonization in the Himalaya from the southeastern Qinghai-Tibetan Plateau: Geographical isolation contributed to high population differentiation

(2010) Yu-Zhi Cun et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Speciation and endemism under the model of island biogeography

(2009) Xiao-Yong Chen et al.   ECOLOGY

Adaptation and diversification on islands

(2009) Jonathan B. Losos et al.   NATURE

Genome-wide patterns of population structure and admixture in West Africans and African Americans

(2009) K. Bryc et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Transcriptomic variation and plasticity in rufous-collared sparrows (Zonotrichia capensis) along an altitudinal gradient

(2008) ZACHARY A. CHEVIRON et al.   MOLECULAR ECOLOGY

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

(2008) Nathan A. Baird et al.   PLoS One

Late Quaternary glaciation in the Kyrgyz Tien Shan

(2008) Michéle Koppes et al.   QUATERNARY SCIENCE REVIEWS

What do we mean by ‘refugia’?

(2008) K BENNETT et al.   QUATERNARY SCIENCE REVIEWS