Multi-domain knowledge graph embeddings for gene-disease association prediction

Biomedical knowledge graph embeddings for personalized medicine: Predicting disease‐gene associations

(2022) Joana Vilela et al.   EXPERT SYSTEMS

OWL2Vec*: embedding of OWL ontologies

(2021) Jiaoyan Chen et al.   MACHINE LEARNING

Semantic similarity and machine learning with ontologies

(2020) Maxat Kulmanov et al.   BRIEFINGS IN BIOINFORMATICS

The Gene Ontology resource: enriching a GOld mine

(2020) et al.   NUCLEIC ACIDS RESEARCH

The Human Phenotype Ontology in 2021

(2020) Sebastian Köhler et al.   NUCLEIC ACIDS RESEARCH

Identifying Disease-Gene Associations With Graph-Regularized Manifold Learning

(2019) Ping Luo et al.   Frontiers in Genetics

Estimating cumulative point prevalence of rare diseases: analysis of the Orphanet database

(2019) Stéphanie Nguengang Wakap et al.   EUROPEAN JOURNAL OF HUMAN GENETICS

The DisGeNET knowledge platform for disease genomics: 2019 update

(2019) Janet Piñero et al.   NUCLEIC ACIDS RESEARCH

Gene prioritization using Bayesian matrix factorization with genomic and phenotypic side information

(2018) Pooya Zakeri et al.   BIOINFORMATICS

Improving the interoperability of biomedical ontologies with compound alignments

(2018) Daniela Oliveira et al.   Journal of Biomedical Semantics

OPA2Vec: combining formal and informal content of biomedical ontologies to improve similarity-based prediction

(2018) Fatima Zohra Smaili et al.   BIOINFORMATICS

UniProt: a worldwide hub of protein knowledge

(2018)   NUCLEIC ACIDS RESEARCH

Identifying disease genes using machine learning and gene functional similarities, assessed through Gene Ontology

(2018) Muhammad Asif et al.   PLoS One

Knowledge Graph Embedding: A Survey of Approaches and Applications

(2017) Quan Wang et al.   IEEE TRANSACTIONS ON KNOWLEDGE AND DATA ENGINEERING

Knowledge graph refinement: A survey of approaches and evaluation methods

(2016) Heiko Paulheim   Semantic Web

OMIM.org: Online Mendelian Inheritance in Man (OMIM®), an online catalog of human genes and genetic disorders

(2014) Joanna S. Amberger et al.   NUCLEIC ACIDS RESEARCH

Improved exome prioritization of disease genes through cross-species phenotype comparison

(2013) P. N. Robinson et al.   GENOME RESEARCH

Leakage in data mining

(2013) Shachar Kaufman et al.   ACM Transactions on Knowledge Discovery from Data

Improving ontologies by automatic reasoning and evaluation of logical definitions

(2011) Sebastian Köhler et al.   BMC BIOINFORMATICS

Associating Genes and Protein Complexes with Disease via Network Propagation

(2010) Oron Vanunu et al.   PLoS Computational Biology

Semantic Similarity in Biomedical Ontologies

(2009) Catia Pesquita et al.   PLoS Computational Biology