Automatic classification of experimental models in biomedical literature to support searching for alternative methods to animal experiments

BERN2: an advanced neural biomedical named entity recognition and normalization tool

(2022) Mujeen Sung et al.   BIOINFORMATICS

TeamTat: a collaborative text annotation tool

(2020) Rezarta Islamaj et al.   NUCLEIC ACIDS RESEARCH

PubTator central: automated concept annotation for biomedical full text articles

(2019) Chih-Hsuan Wei et al.   NUCLEIC ACIDS RESEARCH

BioBERT: a pre-trained biomedical language representation model for biomedical text mining

(2019) Jinhyuk Lee et al.   BIOINFORMATICS

Cell line name recognition in support of the identification of synthetic lethality in cancer from text

(2015) Suwisa Kaewphan et al.   BIOINFORMATICS

Anatomical entity mention recognition at literature scale

(2013) Sampo Pyysalo et al.   BIOINFORMATICS

The SPECIES and ORGANISMS Resources for Fast and Accurate Identification of Taxonomic Names in Text

(2013) Evangelos Pafilis et al.   PLoS One

The NCBI Taxonomy database

(2011) S. Federhen   NUCLEIC ACIDS RESEARCH

LINNAEUS: A species name identification system for biomedical literature

(2010) Martin Gerner et al.   BMC BIOINFORMATICS