Pan cancer characterization of genes whose expression has been associated with LINE-1 antisense promoter activity

Epigenetically controlled tumor antigens derived from splice junctions between exons and transposable elements

(2023) Marianne Burbage et al.   Science Immunology

Noncanonical splicing junctions between exons and transposable elements represent a source of immunogenic recurrent neo-antigens in patients with lung cancer

(2023) Antonela Merlotti et al.   Science Immunology

Pan-cancer analysis identifies tumor-specific antigens derived from transposable elements

(2023) Nakul M. Shah et al.   NATURE GENETICS

L1 chimeric transcripts are expressed in healthy brain and their deregulation in glioma follows that of their host locus

(2022) Marie-Elisa Pinson et al.   HUMAN MOLECULAR GENETICS

Single-cell RNA-seq-based proteogenomics identifies glioblastoma-specific transposable elements encoding HLA-I-presented peptides

(2022) Pierre-Emmanuel Bonté et al.   Cell Reports

RhoGTPase Signalling in Cancer Progression and Dissemination

(2021) Eva Crosas-Molist et al.   PHYSIOLOGICAL REVIEWS

Tumor Long-interspersed Nucleotide Element-1 Methylation Level and Immune Response to Esophageal Cancer

(2019) Keisuke Kosumi et al.   ANNALS OF SURGERY

A pan-cancer perspective of matrix metalloproteases (MMP) gene expression profile and their diagnostic/prognostic potential

(2019) Emily Gobin et al.   BMC CANCER

TRIM67 activates p53 to suppress colorectal cancer initiation and progression

(2019) Shiyan Wang et al.   CANCER RESEARCH

THE EXPRESSION OF LINE1-MET CHIMERIC TRANSCRIPT IDENTIFIES A SUBGROUP OF AGGRESSIVE BREAST CANCERS

(2018) Umberto Miglio et al.   INTERNATIONAL JOURNAL OF CANCER

GTSE1: a novel TEAD4-E2F1 target gene involved in cell protrusions formation in triple-negative breast cancer cell models

(2017) Debora Stelitano et al.   Oncotarget

Genome-wide characterization of human L1 antisense promoter-driven transcripts

(2016) Steven W. Criscione et al.   BMC GENOMICS

Roles for retrotransposon insertions in human disease

(2016) Dustin C. Hancks et al.   Mobile DNA

The Molecular Signatures Database Hallmark Gene Set Collection

(2015) Arthur Liberzon et al.   Cell Systems

Long Interspersed Element-1 Protein Expression Is a Hallmark of Many Human Cancers

(2014) Nemanja Rodić et al.   AMERICAN JOURNAL OF PATHOLOGY

Transcriptional landscape of repetitive elements in normal and cancer human cells

(2014) Steven W Criscione et al.   BMC GENOMICS

Association between germline single nucleotide polymorphisms in the PI3K-AKT-mTOR pathway, obesity, and breast cancer disease-free survival

(2014) Mala Pande et al.   BREAST CANCER RESEARCH AND TREATMENT

Endogenous Retrotransposition Activates Oncogenic Pathways in Hepatocellular Carcinoma

(2013) Ruchi Shukla et al.   CELL

Expression of a large LINE-1-driven antisense RNA is linked to epigenetic silencing of the metastasis suppressor gene TFPI-2 in cancer

(2013) Hazel A. Cruickshanks et al.   NUCLEIC ACIDS RESEARCH

Active Transposition in Genomes

(2012) Cheng Ran Lisa Huang et al.   Annual Review of Genetics

Human Transposon Tectonics

(2012) Kathleen H. Burns et al.   CELL

clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters

(2012) Guangchuang Yu et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Natural Mutagenesis of Human Genomes by Endogenous Retrotransposons

(2010) Rebecca C. Iskow et al.   CELL