Single-cell profiling of Arabidopsis leaves to Pseudomonas syringae infection

Broader functions of TIR domains in Arabidopsis immunity

(2023) Pierre Jacob et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A single-cell Arabidopsis root atlas reveals developmental trajectories in wild-type and cell identity mutants

(2022) Rachel Shahan et al.   DEVELOPMENTAL CELL

Genome Context Influences Evolutionary Flexibility of Nearly Identical Type III Effectors in Two Phytopathogenic Pseudomonads

(2022) David A. Baltrus et al.   Frontiers in Microbiology

Evolutionarily conserved bacterial effectors hijack abscisic acid signaling to induce an aqueous environment in the apoplast

(2022) Charles Roussin-Léveillée et al.   Cell Host & Microbe

Dynamic nutrient acquisition from a hydrated apoplast supports biotrophic proliferation of a bacterial pathogen of maize

(2022) Irene Gentzel et al.   Cell Host & Microbe

Bacterial effectors manipulate plant abscisic acid signaling for creation of an aqueous apoplast

(2022) Yezhou Hu et al.   Cell Host & Microbe

Phytocytokine signalling reopens stomata in plant immunity and water loss

(2022) Zunyong Liu et al.   NATURE

Increasing the resilience of plant immunity to a warming climate

(2022) Jong Hum Kim et al.   NATURE

Leaf cell-specific and single-cell transcriptional profiling reveals a role for the palisade layer in UV light protection

(2022) Carl Procko et al.   PLANT CELL

Advances and Opportunities of Single-Cell Transcriptomics for Plant Research

(2021) Carolin Seyfferth et al.   Annual Review of Plant Biology

A single-cell analysis of the Arabidopsis vegetative shoot apex

(2021) Tian-Qi Zhang et al.   DEVELOPMENTAL CELL

Single-cell resolution of lineage trajectories in the Arabidopsis stomatal lineage and developing leaf

(2021) Camila B. Lopez-Anido et al.   DEVELOPMENTAL CELL

Integrated analysis of multimodal single-cell data

(2021) Yuhan Hao et al.   CELL

Stop helping pathogens: engineering plant susceptibility genes for durable resistance

(2021) Hernan Garcia-Ruiz et al.   CURRENT OPINION IN BIOTECHNOLOGY

PTI-ETI crosstalk: an integrative view of plant immunity

(2021) Minhang Yuan et al.   CURRENT OPINION IN PLANT BIOLOGY

The main oxidative inactivation pathway of the plant hormone auxin

(2021) Ken-ichiro Hayashi et al.   Nature Communications

Co-incidence of Damage and Microbial Patterns Controls Localized Immune Responses in Roots

(2020) Feng Zhou et al.   CELL

Plant NLR-triggered immunity: from receptor activation to downstream signaling

(2020) Signe Lolle et al.   CURRENT OPINION IN IMMUNOLOGY

Plant Immunity: Danger Perception and Signaling

(2020) Jian-Min Zhou et al.   CELL

Global Dynamic Molecular Profiling of Stomatal Lineage Cell Development by Single-Cell RNA Sequencing

(2020) Zhixin Liu et al.   Molecular Plant

Asynchronous development of Zymoseptoria tritici infection in wheat

(2020) Elena Fantozzi et al.   FUNGAL GENETICS AND BIOLOGY

The single-cell transcriptional landscape of mammalian organogenesis

(2019) Junyue Cao et al.   NATURE

Spatiotemporal Developmental Trajectories in the Arabidopsis Root Revealed Using High-Throughput Single-Cell RNA Sequencing

(2019) Tom Denyer et al.   DEVELOPMENTAL CELL

A Single-Cell RNA Sequencing Profiles the Developmental Landscape of Arabidopsis Root

(2019) Tian-Qi Zhang et al.   Molecular Plant

Defense and Counterdefense During Plant-Pathogenic Oomycete Infection

(2019) Yan Wang et al.   Annual Review of Microbiology

Auxin Metabolism Controls Developmental Decisions in Land Plants

(2019) Rubén Casanova-Sáez et al.   TRENDS IN PLANT SCIENCE

Pseudomonas syringae: what it takes to be a pathogen

(2018) Xiu-Fang Xin et al.   NATURE REVIEWS MICROBIOLOGY

Transcriptome landscape of a bacterial pathogen under plant immunity

(2018) Tatsuya Nobori et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome Editing: Targeting Susceptibility Genes for Plant Disease Resistance

(2018) Syed Shan-e-Ali Zaidi et al.   TRENDS IN BIOTECHNOLOGY

RNA velocity of single cells

(2018) Gioele La Manno et al.   NATURE

Highly flexible infection programs in a specialized wheat pathogen

(2018) Janine Haueisen et al.   Ecology and Evolution

A role for random, humidity-dependent epiphytic growth prior to invasion of wheat by Zymoseptoria tritici

(2017) Helen N. Fones et al.   FUNGAL GENETICS AND BIOLOGY

Single-cell mRNA quantification and differential analysis with Census

(2017) Xiaojie Qiu et al.   NATURE METHODS

Reversed graph embedding resolves complex single-cell trajectories

(2017) Xiaojie Qiu et al.   NATURE METHODS

Salicylic Acid and Jasmonic Acid Pathways are Activated in Spatially Different Domains Around the Infection Site During Effector-Triggered Immunity in Arabidopsis thaliana

(2017) Shigeyuki Betsuyaku et al.   PLANT AND CELL PHYSIOLOGY

Direct and Indirect Visualization of Bacterial Effector Delivery into Diverse Plant Cell Types during Infection

(2017) Elizabeth Henry et al.   PLANT CELL

Plant Systems Biology at the Single-Cell Level

(2017) Marc Libault et al.   TRENDS IN PLANT SCIENCE

Massively parallel digital transcriptional profiling of single cells

(2017) Grace X. Y. Zheng et al.   Nature Communications

Plant-Pathogen Effectors: Cellular Probes Interfering with Plant Defenses in Spatial and Temporal Manners

(2016) Tania Y. Toruño et al.   Annual Review of Phytopathology

Bacteria establish an aqueous living space in plants crucial for virulence

(2016) Xiu-Fang Xin et al.   NATURE

Spore Density Determines Infection Strategy by the Plant Pathogenic FungusPlectosphaerella cucumerina

(2016) Pierre Pétriacq et al.   PLANT PHYSIOLOGY

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets

(2015) Evan Z. Macosko et al.   CELL

Plant expansins: diversity and interactions with plant cell walls

(2015) Daniel J Cosgrove   CURRENT OPINION IN PLANT BIOLOGY

The Technology and Biology of Single-Cell RNA Sequencing

(2015) Aleksandra A. Kolodziejczyk et al.   MOLECULAR CELL

Signaling Mechanisms in Pattern-Triggered Immunity (PTI)

(2015) Jean Bigeard et al.   Molecular Plant

Aquaporins in Plants

(2015) Christophe Maurel et al.   PHYSIOLOGICAL REVIEWS

Transcriptional Dynamics Driving MAMP-Triggered Immunity and Pathogen Effector-Mediated Immunosuppression in Arabidopsis Leaves Following Infection withPseudomonas syringaepv tomato DC3000

(2015) Laura A. Lewis et al.   PLANT CELL

ChIP-seq reveals broad roles of SARD1 and CBP60g in regulating plant immunity

(2015) Tongjun Sun et al.   Nature Communications

Development of Gateway Binary Vector Series with Four Different Selection Markers for the Liverwort Marchantia polymorpha

(2015) Kimitsune Ishizaki et al.   PLoS One

Susceptibility Genes 101: How to Be a Good Host

(2014) Chris C.N. van Schie et al.   Annual Review of Phytopathology

The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells

(2014) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Coronatine Promotes Pseudomonas syringae Virulence in Plants by Activating a Signaling Cascade that Inhibits Salicylic Acid Accumulation

(2012) Xiao-yu Zheng et al.   Cell Host & Microbe

Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

(2012) Davis J. McCarthy et al.   NUCLEIC ACIDS RESEARCH

Arabidopsis seedling flood-inoculation technique: a rapid and reliable assay for studying plant-bacterial interactions

(2011) Yasuhiro Ishiga et al.   Plant Methods

Control of salicylic acid synthesis and systemic acquired resistance by two members of a plant-specific family of transcription factors

(2010) Y. Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

mRNA-Seq whole-transcriptome analysis of a single cell

(2009) Fuchou Tang et al.   NATURE METHODS

Tape-Arabidopsis Sandwich - a simpler Arabidopsis protoplast isolation method

(2009) Fu-Hui Wu et al.   Plant Methods

RIN4 Functions with Plasma Membrane H+-ATPases to Regulate Stomatal Apertures during Pathogen Attack

(2009) Jun Liu et al.   PLOS BIOLOGY

Role of Stomata in Plant Innate Immunity and Foliar Bacterial Diseases

(2008) Maeli Melotto et al.   Annual Review of Phytopathology

Activation of the Indole-3-Acetic Acid-Amido Synthetase GH3-8 Suppresses Expansin Expression and Promotes Salicylate- and Jasmonate-Independent Basal Immunity in Rice

(2008) X. Ding et al.   PLANT CELL