Pig manure treatment strategies for mitigating the spread of antibiotic resistance

Metagenomic and HT-qPCR analysis reveal the microbiome and resistome in pig slurry under storage, composting, and anaerobic digestion

(2022) Thi Thuy Do et al.   ENVIRONMENTAL POLLUTION

Swine growth promotion with antibiotics or alternatives can increase antibiotic resistance gene mobility potential

(2021) Johanna Muurinen et al.   Scientific Reports

Antibiotics and Antibiotic Resistance Genes in Animal Manure – Consequences of Its Application in Agriculture

(2021) Magdalena Zalewska et al.   Frontiers in Microbiology

Enhanced removal of antibiotic resistance genes and mobile genetic elements during swine manure composting inoculated with mature compost

(2021) Jia Wang et al.   JOURNAL OF HAZARDOUS MATERIALS

The Use of New Parameters to Optimize the Composting Process of Different Organic Wastes

(2021) Daniela Pezzolla et al.   Agronomy-Basel

Prevalence of extended-spectrum β-lactamases in the local farm environment and livestock: challenges to mitigate antimicrobial resistance

(2020) Shinyoung Lee et al.   CRITICAL REVIEWS IN MICROBIOLOGY

Using MicrobiomeAnalyst for comprehensive statistical, functional, and meta-analysis of microbiome data

(2020) Jasmine Chong et al.   Nature Protocols

Reducing antibiotic use in livestock, China

(2020) Yanhong Jessika Hu et al.   BULLETIN OF THE WORLD HEALTH ORGANIZATION

Changes in microbial community structure during pig manure composting and its relationship to the fate of antibiotics and antibiotic resistance genes

(2020) Yuanwang Liu et al.   JOURNAL OF HAZARDOUS MATERIALS

The profile of antibiotic resistance genes in pig manure composting shaped by composting stage: Mesophilic-thermophilic and cooling-maturation stages

(2020) Rukun Cao et al.   CHEMOSPHERE

Farm dust resistomes and bacterial microbiomes in European poultry and pig farms

(2020) Roosmarijn E.C. Luiken et al.   ENVIRONMENT INTERNATIONAL

Environmental sustainability assessment of pig manure mono- and co-digestion and dynamic land application of the digestate

(2020) Yizhen Zhang et al.   RENEWABLE & SUSTAINABLE ENERGY REVIEWS

Screening of Microbes Associated With Swine Growth and Fat Deposition Traits Across the Intestinal Tract

(2020) Shi Tang et al.   Frontiers in Microbiology

Simultaneous reduction of antibiotics and antibiotic resistance genes in pig manure using a composting process with a novel microbial agent

(2020) Yanting Liu et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Microbial succession and molecular ecological networks response to the addition of superphosphate and phosphogypsum during swine manure composting

(2020) Liusheng Lei et al.   JOURNAL OF ENVIRONMENTAL MANAGEMENT

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

Transfer of antibiotic resistance from manure-amended soils to vegetable microbiomes

(2019) Yu-Jing Zhang et al.   ENVIRONMENT INTERNATIONAL

Synergistic effects of key parameters on the fate of antibiotic resistance genes during swine manure composting

(2019) Xiao-Ming Lu et al.   ENVIRONMENTAL POLLUTION

Microbial inoculation influences bacterial community succession and physicochemical characteristics during pig manure composting with corn straw

(2019) Changning Li et al.   BIORESOURCE TECHNOLOGY

Changes in antibiotic resistance genes and mobile genetic elements during cattle manure composting after inoculation with Bacillus subtilis

(2019) Manli Duan et al.   BIORESOURCE TECHNOLOGY

Antibiotic residues in livestock manure: Does the EU risk assessment sufficiently protect against microbial toxicity and selection of resistant bacteria in the environment?

(2019) Jakob Menz et al.   JOURNAL OF HAZARDOUS MATERIALS

Acidification of pig slurry effects on ammonia and nitrous oxide emissions, nitrate leaching, and perennial ryegrass regrowth as estimated by 15N-urea flux

(2018) Sang Hyun Park et al.   ASIAN-AUSTRALASIAN JOURNAL OF ANIMAL SCIENCES

Comparison of microbial communities in swine manure at various temperatures and storage times

(2018) Joung-Soo Lim et al.   ASIAN-AUSTRALASIAN JOURNAL OF ANIMAL SCIENCES

Sub-inhibitory concentrations of heavy metals facilitate the horizontal transfer of plasmid-mediated antibiotic resistance genes in water environment

(2018) Ye Zhang et al.   ENVIRONMENTAL POLLUTION

Selection of pig manure management strategies: Case study of Polish farms

(2018) Agnieszka Makara et al.   JOURNAL OF CLEANER PRODUCTION

Diversity, abundance, and persistence of antibiotic resistance genes in various types of animal manure following industrial composting

(2018) Xun Qian et al.   JOURNAL OF HAZARDOUS MATERIALS

Does organically produced lettuce harbor higher abundance of antibiotic resistance genes than conventionally produced?

(2017) Bokai Zhu et al.   ENVIRONMENT INTERNATIONAL

Farm compost amendment and non-inversion tillage improve soil quality without increasing the risk for N and P leaching

(2016) Tommy D’Hose et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

Diversity of the Tetracycline Mobilome within a Chinese Pig Manure Sample

(2016) Sébastien Olivier Leclercq et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Recent government regulations in the United States seek to ensure the effectiveness of antibiotics by limiting their agricultural use

(2016) Terence J. Centner   ENVIRONMENT INTERNATIONAL

Long-term field application of sewage sludge increases the abundance of antibiotic resistance genes in soil

(2016) Qinglin Chen et al.   ENVIRONMENT INTERNATIONAL

Particle-Scale Modeling of Methane Emission during Pig Manure/Wheat Straw Aerobic Composting

(2016) Jinyi Ge et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Veterinary antibiotics in animal waste, its distribution in soil and uptake by plants: A review

(2016) Reep Pandi Tasho et al.   SCIENCE OF THE TOTAL ENVIRONMENT

InteractiVenn: a web-based tool for the analysis of sets through Venn diagrams

(2015) Henry Heberle et al.   BMC BIOINFORMATICS

High Throughput Profiling of Antibiotic Resistance Genes in Urban Park Soils with Reclaimed Water Irrigation

(2014) Feng-Hua Wang et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Broad host range plasmids

(2013) Aayushi Jain et al.   FEMS MICROBIOLOGY LETTERS

The SILVA and “All-species Living Tree Project (LTP)” taxonomic frameworks

(2013) Pelin Yilmaz et al.   NUCLEIC ACIDS RESEARCH

Diverse and abundant antibiotic resistance genes in Chinese swine farms

(2013) Yong-Guan Zhu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Lateral gene transfer

(2011) Olga Zhaxybayeva et al.   CURRENT BIOLOGY

Antibiotic resistance gene spread due to manure application on agricultural fields

(2011) Holger Heuer et al.   CURRENT OPINION IN MICROBIOLOGY

Effect of Various Sludge Digestion Conditions on Sulfonamide, Macrolide, and Tetracycline Resistance Genes and Class I Integrons

(2011) Yanjun Ma et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Sources and mitigation of methane emissions by sectors: A critical review

(2011) Izzet Karakurt et al.   RENEWABLE ENERGY

Effect of Temperature on the Fate of Genes Encoding Tetracycline Resistance and the Integrase of Class 1 Integrons within Anaerobic and Aerobic Digesters Treating Municipal Wastewater Solids

(2010) David L. Diehl et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Novel Integron Gene Cassette Arrays Identified in a Global Collection of Multi-Drug Resistant Non-Typhoidal Salmonella enterica

(2009) Mary Krauland et al.   CURRENT MICROBIOLOGY

Environmental pollution by antibiotics and by antibiotic resistance determinants

(2009) Jose Luis Martinez   ENVIRONMENTAL POLLUTION

Replication and conjugative mobilization of broad host-range IncQ plasmids

(2009) Richard Meyer   PLASMID

Network analyses structure genetic diversity in independent genetic worlds

(2009) S. Halary et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Piggery manure used for soil fertilization is a reservoir for transferable antibiotic resistance plasmids

(2008) Chu Thi Thanh Binh et al.   FEMS MICROBIOLOGY ECOLOGY