HantaNet: A New MicrobeTrace Application for Hantavirus Classification, Genomic Surveillance, Epidemiology and Outbreak Investigations

Hantavirus Pulmonary Syndrome: 1993–2018

(2023) Lauren Thorp et al.   PEDIATRICS

Transmitted HIV Drug Resistance in Bulgaria Occurs in Clusters of Individuals from Different Transmission Groups and Various Subtypes (2012–2020)

(2023) Ivailo Alexiev et al.   Viruses-Basel

Andes Virus Genome Mutations That Are Likely Associated with Animal Model Attenuation and Human Person-to-Person Transmission

(2023) Carla M. Bellomo et al.   mSphere

Integrated genomic surveillance enables tracing of person-to-person SARS-CoV-2 transmission chains during community transmission and reveals extensive onward transmission of travel-imported infections, Germany, June to July 2021

(2022) Torsten Houwaart et al.   Eurosurveillance

Scalable Bayesian phylogenetics

(2022) Alexander A. Fisher et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

TreeKnit: Inferring ancestral reassortment graphs of influenza viruses

(2022) Pierre Barrat-Charlaix et al.   PLoS Computational Biology

Molecular Epidemiology of HIV-1 Subtype B Infection across Florida Reveals Few Large Superclusters with Metropolitan Origin

(2022) Shannan N. Rich et al.   Microbiology Spectrum

Transmission Analysis of COVID-19 Outbreaks Associated with Places of Worship, Arkansas, May 2020–December 2020

(2022) Mallory Jayroe et al.   JOURNAL OF RELIGION & HEALTH

Genomic Epidemiology and Active Surveillance to Investigate Outbreaks of Hantaviruses

(2021) Won-Keun Kim et al.   Frontiers in Cellular and Infection Microbiology

Tuberculosis Outbreak Associated With Delayed Diagnosis and Long Infectious Periods in Rural Arkansas, 2010-2018

(2021) Sarah M. Labuda et al.   PUBLIC HEALTH REPORTS

Applying Genomic Epidemiology to Characterize a COVID-19 Outbreak in a Developmentally Disabled Adult Group Home Setting, Arizona

(2021) Hayley D. Yaglom et al.   Frontiers in Public Health

Next-generation sequencing studies on the E1-HVR1 region of hepatitis C virus (HCV) from non-high-risk HCV patients living in Punjab and Khyber Pakhtunkhwa, Pakistan

(2021) Javeria Rafique Rao et al.   ARCHIVES OF VIROLOGY

Evidence for human-to-human transmission of hantavirus: a systematic review

(2021) Joao Toledo et al.   JOURNAL OF INFECTIOUS DISEASES

Tracing transmission of Sin Nombre virus and discovery of infection in multiple rodent species

(2021) Samuel M. Goodfellow et al.   JOURNAL OF VIROLOGY

The Role of Phylogenetics in Unravelling Patterns of HIV Transmission towards Epidemic Control: The Quebec Experience (2002–2020)

(2021) Bluma G. Brenner et al.   Viruses-Basel

MicrobeTrace: Retooling molecular epidemiology for rapid public health response

(2021) Ellsworth M. Campbell et al.   PLoS Computational Biology

Phylodynamic Analysis Complements Partner Services by Identifying Acute and Unreported HIV Transmission

(2020) Ellsworth M. Campbell et al.   Viruses-Basel

Seoul Virus Infection and Spread in United States Home-Based Ratteries: Rat and Human Testing Results From a Multistate Outbreak Investigation

(2020) Barbara Knust et al.   JOURNAL OF INFECTIOUS DISEASES

Phylogeographic approaches to characterize the emergence of plant pathogens

(2020) David Rasmussen et al.   PHYTOPATHOLOGY

“Super-Spreaders” and Person-to-Person Transmission of Andes Virus in Argentina

(2020) Valeria P. Martínez et al.   NEW ENGLAND JOURNAL OF MEDICINE

Active Targeted Surveillance to Identify Sites of Emergence of Hantavirus

(2019) Won-Keun Kim et al.   CLINICAL INFECTIOUS DISEASES

Increased HIV diagnoses in West Virginia counties highly vulnerable to rapid HIV dissemination through injection drug use: A cautionary tale

(2019) Heather Bradley et al.   ANNALS OF EPIDEMIOLOGY

Taxonomy of the order Bunyavirales: update 2019

(2019) Abulikemu Abudurexiti et al.   ARCHIVES OF VIROLOGY

BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis

(2019) Remco Bouckaert et al.   PLoS Computational Biology

Phylogenetic Trees and Networks Can Serve as Powerful and Complementary Approaches for Analysis of Genomic Data

(2019) Christopher Blair et al.   SYSTEMATIC BIOLOGY

Diverse Morphology and Structural Features of Old and New World Hantaviruses

(2019) Amar Parvate et al.   Viruses-Basel

Hantaviridae: Current Classification and Future Perspectives

(2019) Lies Laenen et al.   Viruses-Basel

Nextstrain: real-time tracking of pathogen evolution

(2018) James Hadfield et al.   BIOINFORMATICS

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

(2018) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Reassortment events in the evolution of hantaviruses

(2018) Boris Klempa   VIRUS GENES

Notes on recombination and reassortment in multipartite/segmented viruses

(2018) Arvind Varsani et al.   Current Opinion in Virology

Notes from the Field: Contact Tracing Investigation after First Case of Andes Virus in the United States — Delaware, February 2018

(2018) Aaron Kofman et al.   MMWR-MORBIDITY AND MORTALITY WEEKLY REPORT

Structural Transitions of the Conserved and Metastable Hantaviral Glycoprotein Envelope

(2017) Ilona Rissanen et al.   JOURNAL OF VIROLOGY

Reassortment in segmented RNA viruses: mechanisms and outcomes

(2016) Sarah M. McDonald et al.   NATURE REVIEWS MICROBIOLOGY

What Do We Know about How Hantaviruses Interact with Their Different Hosts?

(2016) Myriam Ermonval et al.   Viruses-Basel

RNA Virus Reassortment: An Evolutionary Mechanism for Host Jumps and Immune Evasion

(2015) Dhanasekaran Vijaykrishna et al.   PLoS Pathogens

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Hantaviruses in Africa

(2014) Peter T. Witkowski et al.   VIRUS RESEARCH

Increased Detection of Sin Nombre Hantavirus RNA in Antibody-Positive Deer Mice from Montana, USA: Evidence of Male Bias in RNA Viremia

(2013) Karoun Bagamian et al.   Viruses-Basel

Trees and/or networks to display intraspecific DNA sequence variation?

(2012) PATRICK MARDULYN   MOLECULAR ECOLOGY

Hantavirus infections in Europe and their impact on public health

(2012) Antti Vaheri et al.   REVIEWS IN MEDICAL VIROLOGY

Phylogenetic networks do not need to be complex: using fewer reticulations to represent conflicting clusters

(2010) Leo van Iersel et al.   BIOINFORMATICS

A Global Perspective on Hantavirus Ecology, Epidemiology, and Disease

(2010) C. B. Jonsson et al.   CLINICAL MICROBIOLOGY REVIEWS

Hantaviruses in the Americas and Their Role as Emerging Pathogens

(2010) Brian Hjelle et al.   Viruses-Basel

Hantavirus Evolution in Relation to Its Rodent and Insectivore Hosts: No Evidence for Codivergence

(2008) C. Ramsden et al.   MOLECULAR BIOLOGY AND EVOLUTION