Genetic and functional basis of the reduction effect in bacteriophage ΦX174

Systematic Quantification of Sequence and Structural Determinants Controlling mRNA stability in Bacterial Operons

(2021) Daniel P. Cetnar et al.   ACS Synthetic Biology

Highly accurate protein structure prediction with AlphaFold

(2021) John Jumper et al.   NATURE

Defensive hypervariable regions confer superinfection exclusion in microviruses

(2021) Paul C. Kirchberger et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

AlphaFold Protein Structure Database: massively expanding the structural coverage of protein-sequence space with high-accuracy models

(2021) Mihaly Varadi et al.   NUCLEIC ACIDS RESEARCH

Mutagenic Analysis of a DNA Translocating Tube’s Interior Surface

(2020) Aaron P. Roznowski et al.   Viruses-Basel

An Automated Model Test System for Systematic Development and Improvement of Gene Expression Models

(2020) Alexander C. Reis et al.   ACS Synthetic Biology

Recessive Host Range Mutants and Unsusceptible Cells That Inactivate Virions without Genome Penetration: Ecological and Technical Implications

(2018) Aaron P. Roznowski et al.   JOURNAL OF VIROLOGY

Precise quantification of translation inhibition by mRNA structures that overlap with the ribosomal footprint in N-terminal coding sequences

(2017) Amin Espah Borujeni et al.   NUCLEIC ACIDS RESEARCH

Structural changes of tailless bacteriophage ΦX174 during penetration of bacterial cell walls

(2017) Yingyuan Sun et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Translation Initiation is Controlled by RNA Folding Kinetics via a Ribosome Drafting Mechanism

(2016) Amin Espah Borujeni et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

High-Resolution Structure of a Virally Encoded DNA-Translocating Conduit and the Mechanism of DNA Penetration

(2014) L. Sun et al.   JOURNAL OF VIROLOGY

Icosahedral bacteriophage ΦX174 forms a tail for DNA transport during infection

(2013) Lei Sun et al.   NATURE

Translation rate is controlled by coupled trade-offs between site accessibility, selective RNA unfolding and sliding at upstream standby sites

(2013) Amin Espah Borujeni et al.   NUCLEIC ACIDS RESEARCH

Experimental evolution of viruses: Microviridae as a model system

(2010) H. A. Wichman et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The Expression of N-Terminal Deletion DNA Pilot Proteins Inhibits the Early Stages of  X174 Replication

(2009) M. V. Ruboyianes et al.   JOURNAL OF VIROLOGY

Automated design of synthetic ribosome binding sites to control protein expression

(2009) Howard M Salis et al.   NATURE BIOTECHNOLOGY