Total infectome investigation of diphtheritic stomatitis in yellow-eyed penguins (Megadyptes antipodes) reveals a novel and abundant megrivirus

A novel gyrovirus is abundant in yellow-eyed penguin (Megadyptes antipodes) chicks with a fatal respiratory disease

(2023) Janelle R. Wierenga et al.   VIROLOGY

Corynebacterium megadyptis sp. nov. with two subspecies, Corynebacterium megadyptis subsp. megadyptis subsp. nov. and Corynebacterium megadyptis subsp. dunedinense subsp. nov. isolated from yellow-eyed penguins

(2023) Imen Nouioui et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Composition and function of the Galapagos penguin gut microbiome vary with age, location, and a putative bacterial pathogen

(2023) Sage D. Rohrer et al.   Scientific Reports

Host phylogeny shapes viral transmission networks in an island ecosystem

(2023) Rebecca K. French et al.   Nature Ecology & Evolution

Phylogenomic Characterization of a Novel Corynebacterium Species Associated with Fatal Diphtheritic Stomatitis in Endangered Yellow-Eyed Penguins

(2021) Sarah C. Saunderson et al.   mSystems

A new coronavirus associated with human respiratory disease in China

(2020) Fan Wu et al.   NATURE

Early-life gut dysbiosis linked to juvenile mortality in ostriches

(2020) Elin Videvall et al.   Microbiome

Origins of Enterovirus Replication Organelles Established by Whole-Cell Electron Microscopy

(2019) Charlotte E. Melia et al.   mBio

Brain abscess and cervical lymphadenitis due to Paraclostridium bifermentans : A report of two cases

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Unusual Outbreak of Fatal Clostridiosis in a Group of Captive Brown Pelicans (Pelecanus occidentalis)

(2017) Imke Lueders et al.   JOURNAL OF AVIAN MEDICINE AND SURGERY

DIPHTHERITIC STOMATITIS IN YELLOW-EYED PENGUINS (MEGADYPTES ANTIPODES) IN NEW ZEALAND

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ModelFinder: fast model selection for accurate phylogenetic estimates

(2017) Subha Kalyaanamoorthy et al.   NATURE METHODS

Metagenomic characterization of the virome associated with bovine respiratory disease in feedlot cattle identified novel viruses and suggests an etiologic role for influenza D virus

(2016) Namita Mitra et al.   JOURNAL OF GENERAL VIROLOGY

Redefining the invertebrate RNA virosphere

(2016) Mang Shi et al.   NATURE

A Panel of Stably Expressed Reference Genes for Real-Time qPCR Gene Expression Studies of Mallards (Anas platyrhynchos)

(2016) Joanne R. Chapman et al.   PLoS One

A diarrheic chicken simultaneously co-infected with multiple picornaviruses: Complete genome analysis of avian picornaviruses representing up to six genera

(2016) Ákos Boros et al.   VIROLOGY

Novel Picornavirus Associated with Avian Keratin Disorder in Alaskan Birds

(2016) Maxine Zylberberg et al.   mBio

Fatal SpontaneousClostridium bifermentansNecrotizing Endometritis: A Case Report and Literature Review of the Pathogen

(2016) Andrew Hale et al.   Open Forum Infectious Diseases

Identification of a picornavirus from chickens with transmissible viral proventriculitis using metagenomic analysis

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Empyema Caused byClostridium bifermentans: A Case Report

(2015) Safa Edagiz et al.   Canadian Journal of Infectious Diseases & Medical Microbiology

A Metagenomics and Case-Control Study To Identify Viruses Associated with Bovine Respiratory Disease

(2015) Terry Fei Fan Ng et al.   JOURNAL OF VIROLOGY

Virus Excretion from Foot-And-Mouth Disease Virus Carrier Cattle and Their Potential Role in Causing New Outbreaks

(2015) Aravindh Babu R. Parthiban et al.   PLoS One

Persistent Foot-and-Mouth Disease Virus Infection in the Nasopharynx of Cattle; Tissue-Specific Distribution and Local Cytokine Expression

(2015) Juan M. Pacheco et al.   PLoS One

Comparative Complete Genome Analysis of Chicken and Turkey Megriviruses (Family Picornaviridae): Long 3' Untranslated Regions with a Potential Second Open Reading Frame and Evidence for Possible Recombination

(2014) A. Boros et al.   JOURNAL OF VIROLOGY

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Hepatitis A virus and the origins of picornaviruses

(2014) Xiangxi Wang et al.   NATURE

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

Actionable Diagnosis of Neuroleptospirosis by Next-Generation Sequencing

(2014) Michael R. Wilson et al.   NEW ENGLAND JOURNAL OF MEDICINE

A Culture-Independent Sequence-Based Metagenomics Approach to the Investigation of an Outbreak of Shiga-Toxigenic Escherichia coli O104:H4

(2013) Nicholas J. Loman et al.   JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

The Viruses of Wild Pigeon Droppings

(2013) Tung Gia Phan et al.   PLoS One

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(2012) Alexander Dobin et al.   BIOINFORMATICS

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(2012) Ben Langmead et al.   NATURE METHODS

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(2011) Bo Li et al.   BMC BIOINFORMATICS

Clostridial Dermatitis and Cellulitis: An Emerging Disease of Turkeys

(2010) Steven Clark et al.   AVIAN DISEASES

A Metagenomic Analysis of Pandemic Influenza A (2009 H1N1) Infection in Patients from North America

(2010) Alexander L. Greninger et al.   PLoS One

Colibacillosis in poultry: unravelling the molecular basis of virulence of avian pathogenicEscherichia coliin their natural hosts

(2008) Francis Dziva et al.   AVIAN PATHOLOGY