The alteration of structural network upon transient association between proteins studied using graph theory

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Graph Spectral Properties of the Sidechain Networks of Protein Structures: Implications to Allostery and Structure Comparison

(2019) Saraswathi Vishveshwara et al.   BIOPHYSICAL JOURNAL

Validation of protein structure models using network similarity score

(2017) Sambit Ghosh et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

An allosteric transport mechanism for the AcrAB-TolC multidrug efflux pump

(2017) Zhao Wang et al.   eLife

Protein Structure and Function: Looking through the Network of Side-Chain Interactions

(2015) Moitrayee Bhattacharyya et al.   CURRENT PROTEIN & PEPTIDE SCIENCE

Pancreatic α-Amylase Controls Glucose Assimilation by Duodenal Retrieval throughN-Glycan-specific Binding, Endocytosis, and Degradation

(2015) Kimie Date et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

ProPairs: A Data Set for Protein–Protein Docking

(2015) Florian Krull et al.   Journal of Chemical Information and Modeling

Biophysics of protein evolution and evolutionary protein biophysics

(2014) T. Sikosek et al.   Journal of the Royal Society Interface

A Unified View of “How Allostery Works”

(2014) Chung-Jung Tsai et al.   PLoS Computational Biology

PRIGSA: Protein repeat identification by graph spectral analysis

(2014) Broto Chakrabarty et al.   Journal of Bioinformatics and Computational Biology

SMALL WORLD NETWORK STRATEGIES FOR STUDYING PROTEIN STRUCTURES AND BINDING

(2013) Neil R. Taylor   Computational and Structural Biotechnology Journal

Transient protein-protein interactions

(2011) S. E. Acuner Ozbabacan et al.   PROTEIN ENGINEERING DESIGN & SELECTION

Interaction Energy Based Protein Structure Networks

(2010) M.S. Vijayabaskar et al.   BIOPHYSICAL JOURNAL

Protein binding specificity versus promiscuity

(2010) Gideon Schreiber et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Understanding Protein Structure from a Percolation Perspective

(2009) Dhruba Deb et al.   BIOPHYSICAL JOURNAL

Protein allostery, signal transmission and dynamics: a classification scheme of allosteric mechanisms

(2009) Chung-Jung Tsai et al.   Molecular BioSystems

Random network behaviour of protein structures

(2009) K. V. Brinda et al.   Molecular BioSystems

Structural basis of actin recognition and arginine ADP-ribosylation by Clostridium perfringens  -toxin

(2008) H. Tsuge et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA