Transcriptional landscape of pathogen‐responsive lncRNAs in tomato unveils the role of hydrolase encoding genes in response to Botrytis cinerea invasion

Linking discoveries, mechanisms, and technologies to develop a clearer perspective on plant long non-coding RNAs

(2023) Kyle Palos et al.   PLANT CELL

Botrytis cinerea

(2023) Tong Chen et al.   CURRENT BIOLOGY

A receptor‐like kinase SlFERL mediates immune responses of tomato to Botrytis cinerea by recognizing BcPG1 and fine‐tuning MAPK signaling

(2023) Dongchao Ji et al.   NEW PHYTOLOGIST

Thirty years of resistance: Zig-zag through the plant immune system

(2022) Bruno Pok Man Ngou et al.   PLANT CELL

lncRNA7 and lncRNA2 modulate cell wall defense genes to regulate cotton resistance to Verticillium wilt

(2022) Lin Zhang et al.   PLANT PHYSIOLOGY

Plant chitinases and their role in plant defense: A comprehensive review

(2022) Bhaumik Vaghela et al.   ENZYME AND MICROBIAL TECHNOLOGY

Killing softly: a roadmap of Botrytis cinerea pathogenicity

(2022) Kai Bi et al.   TRENDS IN PLANT SCIENCE

The infection cushion of Botrytis cinerea : a fungal ‘weapon’ of plant‐biomass destruction

(2021) Mathias Choquer et al.   ENVIRONMENTAL MICROBIOLOGY

Making sense of the natural antisense transcript puzzle

(2021) Rodrigo Siqueira Reis et al.   TRENDS IN PLANT SCIENCE

A Pathogen-Responsive Gene Cluster for Highly Modified Fatty Acids in Tomato

(2020) Ju Eun Jeon et al.   CELL

SlARG2 contributes to MeJA ‐induced defense responses to Botrytis cinerea in tomato fruit

(2020) Dedong Min et al.   PEST MANAGEMENT SCIENCE

Sly‐lncRNA15492 interacts with Sly‐miR482a and affects Solanum lycopersicum immunity against Phytophthora infestans

(2020) Ning Jiang et al.   PLANT JOURNAL

CRISPR/Cas9-mediated VvPR4b editing decreases downy mildew resistance in grapevine (Vitis vinifera L.)

(2020) Meng-Yuan Li et al.   Horticulture Research

Tomato lncRNA23468 functions as a competing endogenous RNA to modulate NBS-LRR genes by decoying miR482b in the tomato-Phytophthora infestans interaction

(2019) Ning Jiang et al.   Horticulture Research

Transcriptional landscape of pathogen‐responsive lnc RNA s in rice unveils the role of ALEX 1 in jasmonate pathway and disease resistance

(2019) Yang Yu et al.   PLANT BIOTECHNOLOGY JOURNAL

The Polycomb protein LHP 1 regulates Arabidopsis thaliana stress responses through the repression of the MYC 2‐dependent branch of immunity

(2019) J.S. Ramirez‐Prado et al.   PLANT JOURNAL

Plant Noncoding RNAs: Hidden Players in Development and Stress Responses

(2019) Yu Yu et al.   Annual Review of Cell and Developmental Biology

LncRNA39026 Enhances Tomato Resistance to Phytophthora infestans by Decoying miR168a and Inducing PR Gene Expression

(2019) Xinxin Hou et al.   PHYTOPATHOLOGY

A Fungus-Inducible Pepper Carboxylesterase Exhibits Antifungal Activity by Decomposing the Outer Layer of Fungal Cell Walls

(2018) Hyo-Hyoun Seo et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

CRISPR/Cas9-mediated mutagenesis of lncRNA1459 alters tomato fruit ripening

(2018) Ran Li et al.   PLANT JOURNAL

Many Shades of Grey in Botrytis –Host Plant Interactions

(2018) Javier Veloso et al.   TRENDS IN PLANT SCIENCE

ELF18-INDUCED LONG NONCODING RNA 1 evicts fibrillarin from mediator subunit to enhance PATHOGENESIS-RELATED GENE 1 (PR1 ) expression

(2018) Jun Sung Seo et al.   NEW PHYTOLOGIST

LncRNA33732-respiratory burst oxidase module associated with WRKY1 in tomato- Phytophthora infestans interactions

(2018) Jun Cui et al.   PLANT JOURNAL

Quantitative Resistance: More Than Just Perception of a Pathogen

(2017) Jason A. Corwin et al.   PLANT CELL

ELF18-INDUCED LONG-NONCODING RNA Associates with Mediator to Enhance Expression of Innate Immune Response Genes in Arabidopsis

(2017) Jun Sung Seo et al.   PLANT CELL

MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato

(2017) Minmin Du et al.   PLANT CELL

Comparative transcriptome analysis between resistant and susceptible tomato allows the identification of lncRNA16397 conferring resistance toPhytophthora infestansby co-expressing glutaredoxin

(2017) Jun Cui et al.   PLANT JOURNAL

The subtilisin-like protease SBT3 contributes to insect resistance in tomato

(2016) Michael Meyer et al.   JOURNAL OF EXPERIMENTAL BOTANY

Reference gene selection for quantitative real-time PCR in Solanum lycopersicum L. inoculated with the mycorrhizal fungus Rhizophagus irregularis

(2016) Alejandra Fuentes et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Tomato Sl3-MMP, a member of the Matrix metalloproteinase family, is required for disease resistance against Botrytis cinerea and Pseudomonas syringae pv. tomato DC3000

(2015) Dayong Li et al.   BMC PLANT BIOLOGY

Chitosan Controls Postharvest Decay on Cherry Tomato Fruit Possibly via the Mitogen-Activated Protein Kinase Signaling Pathway

(2015) Danfeng Zhang et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

RNA sequencing and functional analysis implicate the regulatory role of long non-coding RNAs in tomato fruit ripening

(2015) Benzhong Zhu et al.   JOURNAL OF EXPERIMENTAL BOTANY

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

(2015) Mihaela Pertea et al.   NATURE BIOTECHNOLOGY

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

Aquaporin8 regulates cellular development and reactive oxygen species production, a critical component of virulence inBotrytis cinerea

(2015) Bang An et al.   NEW PHYTOLOGIST

CPAT: Coding-Potential Assessment Tool using an alignment-free logistic regression model

(2013) Liguo Wang et al.   NUCLEIC ACIDS RESEARCH

Utilizing sequence intrinsic composition to classify protein-coding and long non-coding transcripts

(2013) Liang Sun et al.   NUCLEIC ACIDS RESEARCH

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

The Top 10 fungal pathogens in molecular plant pathology

(2012) RALPH DEAN et al.   MOLECULAR PLANT PATHOLOGY

Enhanced tolerance of transgenic grapevines expressing chitinase and β-1,3-glucanase genes to downy mildew

(2012) Akula Nookaraju et al.   PLANT CELL TISSUE AND ORGAN CULTURE

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Demethylation of oligogalacturonides by FaPE1 in the fruits of the wild strawberry Fragaria vesca triggers metabolic and transcriptional changes associated with defence and development of the fruit

(2011) Sonia Osorio et al.   JOURNAL OF EXPERIMENTAL BOTANY

Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics

(2010) Koh Aoki et al.   BMC GENOMICS

Histology of waxflower (Chamelaucium spp.) flower infection by Botrytis cinerea

(2010) S. Q. Dinh et al.   PLANT PATHOLOGY

Diversity of Serine Hydrolase Activities of Unchallenged andBotrytis-infectedArabidopsis thaliana

(2009) Farnusch Kaschani et al.   MOLECULAR & CELLULAR PROTEOMICS

RNAplex: a fast tool for RNA–RNA interaction search

(2008) Hakim Tafer et al.   BIOINFORMATICS