Environment‐dependent population dynamics emerging from dynamic energy budgets and individual‐scale movement behaviour

Suboptimal foraging theory: How inaccurate predictions and approximations can make better models of adaptive behavior

(2022) Steven F. Railsback   ECOLOGY

Movement, models, and metabolism: Individual-based energy budget models as next-generation extensions for predicting animal movement outcomes across scales

(2021) Matthew Malishev et al.   ECOLOGICAL MODELLING

The Stochastic Nature of Functional Responses

(2021) Gian Marco Palamara et al.   Entropy

Considerations When Applying the Consumer Functional Response Measured Under Artificial Conditions

(2021) Blaine D. Griffen   Frontiers in Ecology and Evolution

SciPy 1.0: fundamental algorithms for scientific computing in Python

(2020) Pauli Virtanen et al.   NATURE METHODS

Energetics as common currency for integrating high resolution activity patterns into dynamic energy budget-individual based models

(2020) Marianna Chimienti et al.   ECOLOGICAL MODELLING

Estimating inter-individual variability of dynamic energy budget model parameters for the copepod Nitocra spinipes from existing life-history data

(2020) Josef Koch et al.   ECOLOGICAL MODELLING

Environment and physiology shape Arctic ungulate population dynamics

(2020) Jean‐Pierre Desforges et al.   GLOBAL CHANGE BIOLOGY

Transferability of Mechanistic Ecological Models Is About Emergence

(2019) Viktoriia Radchuk et al.   TRENDS IN ECOLOGY & EVOLUTION

Toward a metabolic theory of life history

(2019) Joseph Robert Burger et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Altricial-precocial spectra in animal kingdom

(2018) Starrlight Augustine et al.   JOURNAL OF SEA RESEARCH

The AmP project: Comparing species on the basis of dynamic energy budget parameters

(2018) Gonçalo M. Marques et al.   PLoS Computational Biology

Rejuvenating functional responses with renewal theory

(2018) Sylvain Billiard et al.   Journal of the Royal Society Interface

A mechanistic theory of personality-dependent movement behaviour based on dynamic energy budgets

(2018) Andrea Campos-Candela et al.   ECOLOGY LETTERS

Physics of metabolic organization

(2017) Marko Jusup et al.   Physics of Life Reviews

Predicting how many animals will be where: How to build, calibrate and evaluate individual-based models

(2016) Elske van der Vaart et al.   ECOLOGICAL MODELLING

Structural realism, emergence, and predictions in next-generation ecological modelling: Synthesis from a special issue

(2016) Volker Grimm et al.   ECOLOGICAL MODELLING

Integrating ecological insight derived from individual-based simulations and physiologically structured population models

(2016) Roger M. Nisbet et al.   ECOLOGICAL MODELLING

Next-Generation Individual-Based Models Integrate Biodiversity and Ecosystems: Yes We Can, and Yes We Must

(2016) Volker Grimm et al.   ECOSYSTEMS

Improving the forecast for biodiversity under climate change

(2016) M. C. Urban et al.   SCIENCE

How biological clocks and changing environmental conditions determine local population growth and species distribution in Antarctic krill ( Euphausia superba ): a conceptual model

(2015) Jürgen Groeneveld et al.   ECOLOGICAL MODELLING

A coupled movement and bioenergetics model to explore the spawning migration of anchovy in the Bay of Biscay

(2015) Dimitrios V. Politikos et al.   ECOLOGICAL MODELLING

Abiotic stressors and stress responses: What commonalities appear between species across biological organization levels?

(2015) Cécile Sulmon et al.   ENVIRONMENTAL POLLUTION

An Individual-Based Model of Zebrafish Population Dynamics Accounting for Energy Dynamics

(2015) Rémy Beaudouin et al.   PLoS One

Analysis of functional response in presence of schooling phenomena: An IBM approach

(2015) Chiara Accolla et al.   PROGRESS IN OCEANOGRAPHY

Double Trouble at High Density: Cross-Level Test of Resource-Related Adaptive Plasticity and Crowding-Related Fitness

(2014) André Gergs et al.   PLoS One

Predicting Population Dynamics from the Properties of Individuals: A Cross-Level Test of Dynamic Energy Budget Theory

(2013) Benjamin T. Martin et al.   AMERICAN NATURALIST

Coupling 3-D Eulerian bio-physics (ROMS) with individual-based shellfish ecophysiology (SHELL-E): A hybrid model for carrying capacity and environmental impacts of bivalve aquaculture

(2013) Diego A. Ibarra et al.   ECOLOGICAL MODELLING

Evidence of current impact of climate change on life: a walk from genes to the biosphere

(2013) Josep Peñuelas et al.   GLOBAL CHANGE BIOLOGY

Representing the acquisition and use of energy by individuals in agent-based models of animal populations

(2012) Richard M. Sibly et al.   Methods in Ecology and Evolution

A general model for ontogenetic growth under food restriction

(2011) C. Hou et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Dynamic Energy Budget theory meets individual-based modelling: a generic and accessible implementation

(2011) Benjamin T. Martin et al.   Methods in Ecology and Evolution

The ODD protocol: A review and first update

(2010) Volker Grimm et al.   ECOLOGICAL MODELLING

A comparative study of the biomass-based and individual-based models of blue mussels

(2008) Daisuke Kitazawa et al.   ECOLOGICAL MODELLING

Development and validation of an individual based Daphnia magna population model: The influence of crowding on population dynamics

(2008) Thomas Günter Preuss et al.   ECOLOGICAL MODELLING

What the egg can tell about its hen: Embryonic development on the basis of dynamic energy budgets

(2008) S. A. L. M. Kooijman   JOURNAL OF MATHEMATICAL BIOLOGY