Metabarcoding read abundances of orchid mycorrhizal fungi are correlated to copy numbers estimated using ddPCR

Variation in mycorrhizal communities and the level of mycoheterotrophy in grassland and Forest populations of Neottia ovata (Orchidaceae)

(2023) Deyi Wang et al.   FUNCTIONAL ECOLOGY

Patterns in soil microbial diversity across Europe

(2023) Maëva Labouyrie et al.   Nature Communications

Catching change in microbial diversity indicators under different soil organic matter managements: Higher taxonomic resolution, better discrimination?

(2022) Frédérique Changey et al.   ECOLOGICAL INDICATORS

Best practices in metabarcoding of fungi: From experimental design to results

(2022) Leho Tedersoo et al.   MOLECULAR ECOLOGY

Environmental DNA methylation of Lymnaea stagnalis varies with age and is hypermethylated compared to tissue DNA

(2022) Beilun Zhao et al.   Molecular Ecology Resources

Environmental DNA

(2022) Emilie A. Didaskalou et al.   CURRENT BIOLOGY

Mycorrhizal Communities and Isotope Signatures in Two Partially Mycoheterotrophic Orchids

(2021) Hans Jacquemyn et al.   Frontiers in Plant Science

Symbiont switching and trophic mode shifts in Orchidaceae

(2021) Deyi Wang et al.   NEW PHYTOLOGIST

Progress and Prospects of Mycorrhizal Fungal Diversity in Orchids

(2021) Taiqiang Li et al.   Frontiers in Plant Science

Comparing Quantitative Methods for Analyzing Sediment DNA Records of Cyanobacteria in Experimental and Reference Lakes

(2021) Hebah S. Mejbel et al.   Frontiers in Microbiology

The Waiting Room Hypothesis revisited by orchids: were orchid mycorrhizal fungi recruited among root endophytes?

(2021) Marc-André Selosse et al.   ANNALS OF BOTANY

Quantification of marine benthic communities with metabarcoding

(2021) Lise Klunder et al.   Molecular Ecology Resources

The particle size distribution of environmental DNA varies with species and degradation

(2021) Beilun Zhao et al.   SCIENCE OF THE TOTAL ENVIRONMENT

PCR inhibition in qPCR, dPCR and MPS—mechanisms and solutions

(2020) Maja Sidstedt et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

How mycorrhizal associations drive plant population and community biology

(2020) Leho Tedersoo et al.   SCIENCE

Altered rhizoctonia assemblages in grasslands on ex‐arable land support germination of mycorrhizal generalist, not specialist orchids

(2020) Hélène Vogt‐Schilb et al.   NEW PHYTOLOGIST

The Ultimate qPCR Experiment: Producing Publication Quality, Reproducible Data the First Time

(2019) Sean C. Taylor et al.   TRENDS IN BIOTECHNOLOGY

Mycorrhizal symbioses and the evolution of trophic modes in plants

(2019) Hans Jacquemyn et al.   JOURNAL OF ECOLOGY

Site specificity in establishment of a commercial arbuscular mycorrhizal fungal inoculant

(2019) Vasilis Kokkoris et al.   SCIENCE OF THE TOTAL ENVIRONMENT

A comparison of droplet digital polymerase chain reaction ( PCR ), quantitative PCR and metabarcoding for species‐specific detection in environmental DNA

(2019) Susanna A Wood et al.   Molecular Ecology Resources

Similarity in mycorrhizal communities associating with two widespread terrestrial orchids decays with distance

(2019) Xiaoke Xing et al.   JOURNAL OF BIOGEOGRAPHY

Combining ddPCR and environmental DNA to improve detection capabilities of a critically endangered freshwater invertebrate

(2019) Quentin Mauvisseau et al.   Scientific Reports

Analysis of human blood plasma cell-free DNA fragment size distribution using EvaGreen chemistry based droplet digital PCR assays

(2018) M. Rohan Fernando et al.   CLINICA CHIMICA ACTA

Counting with DNA in metabarcoding studies: How should we convert sequence reads to dietary data?

(2018) Bruce E. Deagle et al.   MOLECULAR ECOLOGY

Mycorrhizal fungi affect orchid distribution and population dynamics

(2018) Melissa K. McCormick et al.   NEW PHYTOLOGIST

Absolute quantitation of microbiota abundance in environmental samples

(2018) Andrzej Tkacz et al.   Microbiome

How quantitative is metabarcoding: A meta‐analytical approach

(2018) Philip D. Lamb et al.   MOLECULAR ECOLOGY

Genome-based estimates of fungal rDNA copy number variation across phylogenetic scales and ecological lifestyles

(2018) Lotus A. Lofgren et al.   MOLECULAR ECOLOGY

Mycobiome diversity: high-throughput sequencing and identification of fungi

(2018) R. Henrik Nilsson et al.   NATURE REVIEWS MICROBIOLOGY

Mycorrhizal specificity does not limit the distribution of an endangered orchid species

(2017) Michael Waud et al.   MOLECULAR ECOLOGY

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

Correction to High Sensitivity Detection and Quantitation of DNA Copy Number and Single Nucleotide Variants with Single Color Droplet Digital PCR

(2015) Laura Miotke et al.   ANALYTICAL CHEMISTRY

Biological Flora of the British Isles:Neottia ovata

(2015) Milan Kotilínek et al.   JOURNAL OF ECOLOGY

Two widespread greenNeottiaspecies (Orchidaceae) show mycorrhizal preference for Sebacinales in various habitats and ontogenetic stages

(2015) Tamara Těšitelová et al.   MOLECULAR ECOLOGY

Mycorrhizal diversity, seed germination and long-term changes in population size across nine populations of the terrestrial orchidNeottia ovata

(2015) Hans Jacquemyn et al.   MOLECULAR ECOLOGY

Mycorrhizal ecology and evolution: the past, the present, and the future

(2015) Marcel G. A. van der Heijden et al.   NEW PHYTOLOGIST

Quantifying Environmental DNA Signals for Aquatic Invasive Species Across Multiple Detection Platforms

(2014) Lucas M. Nathan et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Impact of primer choice on characterization of orchid mycorrhizal communities using 454 pyrosequencing

(2014) Michael Waud et al.   Molecular Ecology Resources

Temporal patterns of orchid mycorrhizal fungi in meadows and forests as revealed by 454 pyrosequencing

(2014) Jane Oja et al.   NEW PHYTOLOGIST

Fungal community analysis by high-throughput sequencing of amplified markers - a user's guide

(2013) Björn D. Lindahl et al.   NEW PHYTOLOGIST

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Shifts in mycorrhizal fungi during the evolution of autotrophy to mycoheterotrophy in Cymbidium (Orchidaceae)

(2012) Y. Ogura-Tsujita et al.   AMERICAN JOURNAL OF BOTANY

New primers to amplify the fungal ITS2 region - evaluation by 454-sequencing of artificial and natural communities

(2012) Katarina Ihrmark et al.   FEMS MICROBIOLOGY ECOLOGY

Limits of nuclear ribosomal DNA internal transcribed spacer (ITS) sequences as species barcodes for Fungi

(2012) L. Kiss   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi

(2012) C. L. Schoch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evaluation of methods to estimate production, biomass and turnover of ectomycorrhizal mycelium in forests soils – A review

(2012) H. Wallander et al.   SOIL BIOLOGY & BIOCHEMISTRY

High-Throughput Droplet Digital PCR System for Absolute Quantitation of DNA Copy Number

(2011) Benjamin J. Hindson et al.   ANALYTICAL CHEMISTRY

Negative Effects of Sample Pooling on PCR-Based Estimates of Soil Microbial Richness and Community Structure

(2010) D. K. Manter et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Quantifying microbial communities with 454 pyrosequencing: does read abundance count?

(2010) ANTHONY S. AMEND et al.   MOLECULAR ECOLOGY

Effect of PCR amplicon size on assessments of clone library microbial diversity and community structure

(2009) Julie A. Huber et al.   ENVIRONMENTAL MICROBIOLOGY

Fungal specificity bottlenecks during orchid germination and development

(2008) MARTIN I. BIDARTONDO et al.   MOLECULAR ECOLOGY

Internal transcribed spacer primers and sequences for improved characterization of basidiomycetous orchid mycorrhizas

(2008) D. Lee Taylor et al.   NEW PHYTOLOGIST