The genomes of Darwin's primroses reveal chromosome‐scale adaptive introgression and differential permeability of species boundaries

Demographic History and Natural Selection Shape Patterns of Deleterious Mutation Load and Barriers to Introgression across Populus Genome

(2022) Shuyu Liu et al.   MOLECULAR BIOLOGY AND EVOLUTION

Comparative Genomics Elucidates the Origin of a Supergene Controlling Floral Heteromorphism

(2022) Giacomo Potente et al.   MOLECULAR BIOLOGY AND EVOLUTION

Recurring adaptive introgression of a supergene variant that determines social organization

(2022) Eckart Stolle et al.   Nature Communications

Genome-wide analyses of introgression between two sympatric Asian oak species

(2022) Ruirui Fu et al.   Nature Ecology & Evolution

Whole genome analyses disentangle reticulate evolution of primroses in a biodiversity hotspot

(2022) Rebecca L. Stubbs et al.   NEW PHYTOLOGIST

Dynamic molecular evolution of a supergene with suppressed recombination in white-throated sparrows

(2022) Hyeonsoo Jeong et al.   eLife

Comparative transcriptomics reveals commonalities and differences in the genetic underpinnings of a floral dimorphism

(2022) Giacomo Potente et al.   Scientific Reports

Mutation load at a mimicry supergene sheds new light on the evolution of inversion polymorphisms

(2021) Paul Jay et al.   NATURE GENETICS

The genomic architecture and evolutionary fates of supergenes

(2021) Juanita Gutiérrez-Valencia et al.   Genome Biology and Evolution

fastsimcoal2: demographic inference under complex evolutionary scenarios

(2021) Laurent Excofffier et al.   BIOINFORMATICS

The genomic consequences of hybridization

(2021) Benjamin M Moran et al.   eLife

Patterns of genomic divergence and introgression between Japanese stickleback species with overlapping breeding habitats

(2020) Mark Ravinet et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Asymmetries of reproductive isolation are reflected in directionalities of hybridization: Integrative evidence on the complexity of species boundaries

(2020) Barbara Keller et al.   NEW PHYTOLOGIST

Dsuite ‐ Fast D ‐statistics and related admixture evidence from VCF files

(2020) Milan Malinsky et al.   Molecular Ecology Resources

The impact of increased flooding occurrence on the mobility of potentially toxic elements in floodplain soil – A review

(2020) Jessica Ponting et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Adaptive Introgression: An Untapped Evolutionary Mechanism for Crop Adaptation

(2019) Concetta Burgarella et al.   Frontiers in Plant Science

Insights from genomes into the evolutionary importance and prevalence of hybridization in nature

(2019) Scott A. Taylor et al.   Nature Ecology & Evolution

Importance of Pollinator-Mediated Interspecific Pollen Transfer for Angiosperm Evolution

(2019) Juan Isaac Moreira-Hernández et al.   Annual Review of Ecology Evolution and Systematics

‘A most complex marriage arrangement’: recent advances on heterostyly and unresolved questions

(2019) Spencer C. H. Barrett   NEW PHYTOLOGIST

Mating system variation in hybrid zones: facilitation, barriers and asymmetries to gene flow

(2019) Melinda Pickup et al.   NEW PHYTOLOGIST

Eukaryote hybrid genomes

(2019) Anna Runemark et al.   PLoS Genetics

Adaptive introgression: a plant perspective

(2018) Adriana Suarez-Gonzalez et al.   Biology Letters

Supergene Evolution Triggered by the Introgression of a Chromosomal Inversion

(2018) Paul Jay et al.   CURRENT BIOLOGY

Genomics of Parallel Ecological Speciation in Lake Victoria Cichlids

(2018) Joana Isabel Meier et al.   MOLECULAR BIOLOGY AND EVOLUTION

The genomic landscape at a late stage of stickleback speciation: High genomic divergence interspersed by small localized regions of introgression

(2018) Mark Ravinet et al.   PLoS Genetics

Glutathione S-Transferases: Role in Combating Abiotic Stresses Including Arsenic Detoxification in Plants

(2018) Smita Kumar et al.   Frontiers in Plant Science

Variation and constraints in hybrid genome formation

(2018) Anna Runemark et al.   Nature Ecology & Evolution

OUP accepted manuscript

(2018)   MOLECULAR BIOLOGY AND EVOLUTION

Gene ontology enrichment analysis of congenital diaphragmatic hernia-associated genes

(2018) Timothy R. A. Dalmer et al.   PEDIATRIC RESEARCH

Signatures of human-commensalism in the house sparrow genome

(2018) Mark Ravinet et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Exo-ethylene application mitigates waterlogging stress in soybean (Glycine max L.)

(2018) Yoonha Kim et al.   BMC PLANT BIOLOGY

A short story gets longer: recent insights into the molecular basis of heterostyly

(2017) Christian Kappel et al.   JOURNAL OF EXPERIMENTAL BOTANY

ModelFinder: fast model selection for accurate phylogenetic estimates

(2017) Subha Kalyaanamoorthy et al.   NATURE METHODS

Introgression from Populus balsamifera underlies adaptively significant variation and range boundaries in P. trichocarpa

(2017) Adriana Suarez-Gonzalez et al.   NEW PHYTOLOGIST

Gene Regulation and Speciation

(2017) Katya L. Mack et al.   TRENDS IN GENETICS

Ancient hybridization fuels rapid cichlid fish adaptive radiations

(2017) Joana I. Meier et al.   Nature Communications

Glutathione in plants: biosynthesis and physiological role in environmental stress tolerance

(2017) Mirza Hasanuzzaman et al.   PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS

A genomic perspective on hybridization and speciation

(2016) Bret A. Payseur et al.   MOLECULAR ECOLOGY

Genomic distribution and estimation of nucleotide diversity in natural populations: perspectives from the collared flycatcher (Ficedula albicollis ) genome

(2016) Ludovic Dutoit et al.   Molecular Ecology Resources

Both morph- and species-dependent asymmetries affect reproductive barriers between heterostylous species

(2016) Barbara Keller et al.   Ecology and Evolution

Presence versus absence of CYP734A50 underlies the style-length dimorphism in primroses

(2016) Cuong Nguyen Huu et al.   eLife

Does population size affect genetic diversity? A test with sympatric lizard species

(2015) M T J Hague et al.   HEREDITY

Supergenes and Complex Phenotypes

(2014) Tanja Schwander et al.   CURRENT BIOLOGY

Supergenes and their role in evolution

(2014) M J Thompson et al.   HEREDITY

Hybridization, Introgression, and the Nature of Species Boundaries

(2014) Richard G. Harrison et al.   JOURNAL OF HEREDITY

Evaluating the Use of ABBA–BABA Statistics to Locate Introgressed Loci

(2014) Simon H. Martin et al.   MOLECULAR BIOLOGY AND EVOLUTION

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

The genomic landscape of Neanderthal ancestry in present-day humans

(2014) Sriram Sankararaman et al.   NATURE

LUMPY: a probabilistic framework for structural variant discovery

(2014) Ryan M Layer et al.   GENOME BIOLOGY

Genome-wide evidence for speciation with gene flow inHeliconiusbutterflies

(2013) Simon H. Martin et al.   GENOME RESEARCH

Hybridization and speciation

(2013) R. Abbott et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Ultrafast Approximation for Phylogenetic Bootstrap

(2013) B. Q. Minh et al.   MOLECULAR BIOLOGY AND EVOLUTION

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

Genome sequencing reveals complex speciation in the Drosophila simulans clade

(2012) D. Garrigan et al.   GENOME RESEARCH

Genomic scan for single nucleotide polymorphisms reveals patterns of divergence and gene flow between ecologically divergent species

(2012) Kai N. Stölting et al.   MOLECULAR ECOLOGY

Phylogenetic analysis of Primula section Primula reveals rampant non-monophyly among morphologically distinct species

(2012) Alexander N. Schmidt-Lebuhn et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The genomic landscape of species divergence in Ficedula flycatchers

(2012) Hans Ellegren et al.   NATURE

Enhancements to the ADMIXTURE algorithm for individual ancestry estimation

(2011) David H Alexander et al.   BMC BIOINFORMATICS

Repeated Adaptive Introgression at a Gene under Multiallelic Balancing Selection

(2011) Vincent Castric et al.   PLoS Genetics

Biological Flora of the British Isles:Primula verisL.

(2009) Rein Brys et al.   JOURNAL OF ECOLOGY

Biological Flora of the British Isles:Primula vulgarisHuds. (P. acaulis(L.) Hill)

(2009) Hans Jacquemyn et al.   JOURNAL OF ECOLOGY

Disentangling Reticulate Evolution in an Arctic–Alpine Polyploid Complex

(2009) Alessia Guggisberg et al.   SYSTEMATIC BIOLOGY

Genomic consequences of selection on self-incompatibility genes

(2008) Mikkel Heide Schierup et al.   CURRENT OPINION IN PLANT BIOLOGY

The Evolution and Diversification of S-Locus Haplotypes in the Brassicaceae Family

(2008) K. Edh et al.   GENETICS

The pachytene checkpoint and its relationship to evolutionary patterns of polyploidization and hybrid sterility

(2008) X C Li et al.   HEREDITY

Biological Flora of the British Isles: Primula elatior (L.) Hill

(2008) Kenneth Taylor et al.   JOURNAL OF ECOLOGY