Global and cell type-specific immunological hallmarks of severe dengue progression identified via a systems immunology approach

Magnitude and kinetics of the human immune cell response associated with severe dengue progression by single-cell proteomics

(2023) Makeda L. Robinson et al.   Science Advances

The Tabula Sapiens: A multiple-organ, single-cell transcriptomic atlas of humans

(2022) et al.   SCIENCE

An 8-gene machine learning model improves clinical prediction of severe dengue progression

(2022) Yiran E. Liu et al.   Genome Medicine

Contrasting behavior between the three human monocyte subsets in dengue pathophysiology

(2022) Deepti Maheshwari et al.   iScience

Molecular Determinants of Flavivirus Virion Assembly

(2021) Trisha R. Barnard et al.   TRENDS IN BIOCHEMICAL SCIENCES

Temporally integrated single cell RNA sequencing analysis of PBMC from experimental and natural primary human DENV-1 infections

(2021) Adam T. Waickman et al.   PLoS Pathogens

CellPhoneDB: inferring cell–cell communication from combined expression of multi-subunit ligand–receptor complexes

(2020) Mirjana Efremova et al.   Nature Protocols

Positive epistasis between viral polymerase and the 3′ untranslated region of its genome reveals the epidemiologic fitness of dengue virus

(2020) Ayesa Syenina et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Array programming with NumPy

(2020) Charles R. Harris et al.   NATURE

A 20-Gene Set Predictive of Progression to Severe Dengue

(2019) Makeda Robinson et al.   Cell Reports

Metascape provides a biologist-oriented resource for the analysis of systems-level datasets

(2019) Yingyao Zhou et al.   Nature Communications

Human Cytomegalovirus Antigen Presentation by HLA-DR+ NKG2C+ Adaptive NK Cells Specifically Activates Polyfunctional Effector Memory CD4+ T Lymphocytes

(2019) Marcel Costa-García et al.   Frontiers in Immunology

Single-cell transcriptional dynamics of flavivirus infection

(2018) Fabio Zanini et al.   eLife

Subgenomic flaviviral RNAs: What do we know after the first decade of research

(2018) Andrii Slonchak et al.   ANTIVIRAL RESEARCH

Different phenotypes of non-classical monocytes associated with systemic inflammation, endothelial alteration and hepatic compromise in patients with dengue

(2018) Juan S. Naranjo-Gómez et al.   IMMUNOLOGY

Pervasive tertiary structure in the dengue virus RNA genome

(2018) Elizabeth A. Dethoff et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Development of standard clinical endpoints for use in dengue interventional trials

(2018) Kay M. Tomashek et al.   PLoS Neglected Tropical Diseases

Regulatory T-cells in acute dengue viral infection

(2017) Hemadri Eresha Jayaratne et al.   IMMUNOLOGY

Pathogenesis of vascular leak in dengue virus infection

(2017) Gathsaurie Neelika Malavige et al.   IMMUNOLOGY

IgG antibodies to dengue enhanced for FcγRIIIA binding determine disease severity

(2017) Taia T. Wang et al.   SCIENCE

Antibody-dependent enhancement of severe dengue disease in humans

(2017) Leah C. Katzelnick et al.   SCIENCE

Epstein-Barr viral miRNAs inhibit antiviral CD4 + T cell responses targeting IL-12 and peptide processing

(2016) Takanobu Tagawa et al.   JOURNAL OF EXPERIMENTAL MEDICINE

OmniPath: guidelines and gateway for literature-curated signaling pathway resources

(2016) Dénes Türei et al.   NATURE METHODS

Circulating cytokines and chemokines associated with plasma leakage and hepatic dysfunction in Brazilian children with dengue fever

(2015) Ralph Antonio Xavier Ferreira et al.   ACTA TROPICA

Serum levels of IL-8, IFNγ, IL-10, and TGF β and their gene expression levels in severe and non-severe cases of dengue virus infection

(2015) Nidhi Pandey et al.   ARCHIVES OF VIROLOGY

IL-10: The Master Regulator of Immunity to Infection

(2014) Kevin N. Couper et al.   JOURNAL OF IMMUNOLOGY

Comparison of the FDA-Approved CDC DENV-1-4 Real-Time Reverse Transcription-PCR with a Laboratory-Developed Assay for Dengue Virus Detection and Serotyping

(2013) J. J. Waggoner et al.   JOURNAL OF CLINICAL MICROBIOLOGY

The global distribution and burden of dengue

(2013) Samir Bhatt et al.   NATURE

HLA-DO and Its Role in MHC Class II Antigen Presentation

(2013) Yuri O. Poluektov et al.   Frontiers in Immunology

Usefulness and applicability of the revised dengue case classification by disease: multi-centre study in 18 countries

(2011) Judit Barniol et al.   BMC INFECTIOUS DISEASES

Interleukin-10 Signaling in Regulatory T Cells Is Required for Suppression of Th17 Cell-Mediated Inflammation

(2011) Ashutosh Chaudhry et al.   IMMUNITY

Natural killer (NK)-dendritic cell interactions generate MHC class II-dressed NK cells that regulate CD4+ T cells

(2011) M. Nakayama et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Tumour necrosis factor alpha (TNF- ) stimulation of cells with established dengue virus type 2 infection induces cell death that is accompanied by a reduced ability of TNF-  to activate nuclear factor  B and reduced sphingosine kinase-1 activity

(2010) S. Wati et al.   JOURNAL OF GENERAL VIROLOGY

Role of the Chemokine Receptors CCR1, CCR2 and CCR4 in the Pathogenesis of Experimental Dengue Infection in Mice

(2010) Rodrigo Guabiraba et al.   PLoS One

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Antibodies to Envelope Glycoprotein of Dengue Virus during the Natural Course of Infection Are Predominantly Cross-Reactive and Recognize Epitopes Containing Highly Conserved Residues at the Fusion Loop of Domain II

(2008) C.-Y. Lai et al.   JOURNAL OF VIROLOGY