Phytohormone sensing in the biotrophic fungusUstilago maydis- the dual role of the transcription factor Rss1

The old 3-oxoadipate pathway revisited: New insights in the catabolism of aromatics in the saprophytic fungus Aspergillus nidulans

(2015) Tiago M. Martins et al.   FUNGAL GENETICS AND BIOLOGY

Hxt1, a monosaccharide transporter and sensor required for virulence of the maize pathogenUstilago maydis

(2015) David Schuler et al.   NEW PHYTOLOGIST

limma powers differential expression analyses for RNA-sequencing and microarray studies

(2015) Matthew E. Ritchie et al.   NUCLEIC ACIDS RESEARCH

Functional characterization of salicylate hydroxylase from the fungal endophyte Epichloë festucae

(2015) Karen V. Ambrose et al.   Scientific Reports

Amino acid uptake in rust fungi

(2015) Christine Struck   Frontiers in Plant Science

Microbial effectors target multiple steps in the salicylic acid production and signaling pathway

(2015) Shigeyuki Tanaka et al.   Frontiers in Plant Science

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Gene Transfers Shaped the Evolution of De Novo NAD + Biosynthesis in Eukaryotes

(2014) Chad M. Ternes et al.   Genome Biology and Evolution

SMART: recent updates, new developments and status in 2015

(2014) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Unconventionally secreted effectors of two filamentous pathogens target plant salicylate biosynthesis

(2014) Tingli Liu et al.   Nature Communications

Plant Surface Cues Prime Ustilago maydis for Biotrophic Development

(2014) Daniel Lanver et al.   PLoS Pathogens

Abscisic acid dynamics in roots detected with genetically encoded FRET sensors

(2014) Alexander M Jones et al.   eLife

FRET-based reporters for the direct visualization of abscisic acid concentration changes and distribution in Arabidopsis

(2014) Rainer Waadt et al.   eLife

Salicylic acid signal transduction: the initiation of biosynthesis, perception and transcriptional reprogramming

(2014) Carolin Seyfferth et al.   Frontiers in Plant Science

Systemic Acquired Resistance: Turning Local Infection into Global Defense

(2013) Zheng Qing Fu et al.   Annual Review of Plant Biology

Salicylate Degradation by the Fungal Plant Pathogen Sclerotinia sclerotiorum

(2013) Cory D. Penn et al.   CURRENT MICROBIOLOGY

Degradation of the plant defence hormone salicylic acid by the biotrophic fungusUstilago maydis

(2013) Franziska Rabe et al.   MOLECULAR MICROBIOLOGY

Compatibility in the Ustilago maydis–Maize Interaction Requires Inhibition of Host Cysteine Proteases by the Fungal Effector Pit2

(2013) André N. Mueller et al.   PLoS Pathogens

The Xanthomonas campestris Type III Effector XopJ Targets the Host Cell Proteasome to Suppress Salicylic-Acid Mediated Plant Defence

(2013) Suayib Üstün et al.   PLoS Pathogens

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

(2012) H. Thorvaldsdottir et al.   BRIEFINGS IN BIOINFORMATICS

Effect of salicylic acid on Fusarium graminearum, the major causal agent of fusarium head blight in wheat

(2012) Peng-Fei Qi et al.   Fungal Biology

A novel sensor to map auxin response and distribution at high spatio-temporal resolution

(2012) Géraldine Brunoud et al.   NATURE

The Arabidopsis NPR1 Protein Is a Receptor for the Plant Defense Hormone Salicylic Acid

(2012) Yue Wu et al.   Cell Reports

The Ustilago maydis Effector Pep1 Suppresses Plant Immunity by Inhibition of Host Peroxidase Activity

(2012) Christoph Hemetsberger et al.   PLoS Pathogens

Metabolic priming by a secreted fungal effector

(2011) Armin Djamei et al.   NATURE

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

A Novel High-Affinity Sucrose Transporter Is Required for Virulence of the Plant Pathogen Ustilago maydis

(2010) Ramon Wahl et al.   PLOS BIOLOGY

Salicylic Acid, a Multifaceted Hormone to Combat Disease

(2009) A. Corina Vlot et al.   Annual Review of Phytopathology

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Nuclear receptor-like transcription factors in fungi

(2009) A. M. Naar et al.   GENES & DEVELOPMENT

The dual specificity phosphatase Rok1 negatively regulates mating and pathogenicity inUstilago maydis

(2009) Maurizio Di Stasio et al.   MOLECULAR MICROBIOLOGY

Ustilago maydis Infection Strongly Alters Organic Nitrogen Allocation in Maize and Stimulates Productivity of Systemic Source Leaves

(2009) R. J. Horst et al.   PLANT PHYSIOLOGY

Transcription factors in fungi

(2008) Ekaterina Shelest   FEMS MICROBIOLOGY LETTERS

A genome-based analysis of amino acid metabolism in the biotrophic plant pathogen Ustilago maydis

(2008) Michael P. McCann et al.   FUNGAL GENETICS AND BIOLOGY

A nuclear receptor-like pathway regulating multidrug resistance in fungi

(2008) Jitendra K. Thakur et al.   NATURE

Reprogramming a maize plant: transcriptional and metabolic changes induced by the fungal biotroph Ustilago maydis

(2008) Gunther Doehlemann et al.   PLANT JOURNAL