Transcription factor PRO1 targets genes encoding conserved components of fungal developmental signaling pathways

Mechanisms of DNA-binding specificity and functional gene regulation by transcription factors

(2016) Ngaio C Smith et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Chemotropism and Cell Fusion in Neurospora crassa Relies on the Formation of Distinct Protein Complexes by HAM-5 and a Novel Protein HAM-14

(2016) Wilfried Jonkers et al.   GENETICS

Chemotropism and Cell Fusion in Neurospora crassa Relies on the Formation of Distinct Protein Complexes by HAM-5 and a Novel Protein HAM-14

(2016) Wilfried Jonkers et al.   GENETICS

Genome-wide identification of target genes of a mating-type α-domain transcription factor reveals functions beyond sexual development

(2015) Kordula Becker et al.   MOLECULAR MICROBIOLOGY

Prevalence of transcription factors in ascomycete and basidiomycete fungi

(2014) Richard B Todd et al.   BMC GENOMICS

The polyketide synthase gene pks4 is essential for sexual development and regulates fruiting body morphology in Sordaria macrospora

(2014) Daniel Schindler et al.   FUNGAL GENETICS AND BIOLOGY

New Insights Into the Roles of NADPH Oxidases in Sexual Development and Ascospore Germination in Sordaria macrospora

(2014) D. E. Dirschnabel et al.   GENETICS

Identification of NoxD/Pro41 as the homologue of the p22phoxNADPH oxidase subunit in fungi

(2014) Isabelle Lacaze et al.   MOLECULAR MICROBIOLOGY

BcNoxD, a putative ER protein, is a new component of the NADPH oxidase complex inBotrytis cinerea

(2014) Ulrike Siegmund et al.   MOLECULAR MICROBIOLOGY

Characterization of the Neurospora crassa Cell Fusion Proteins, HAM-6, HAM-7, HAM-8, HAM-9, HAM-10, AMPH-1 and WHI-2

(2014) Ci Fu et al.   PLoS One

Absence of a simple code: how transcription factors read the genome

(2014) Matthew Slattery et al.   TRENDS IN BIOCHEMICAL SCIENCES

HAM-5 Functions As a MAP Kinase Scaffold during Cell Fusion in Neurospora crassa

(2014) Wilfried Jonkers et al.   PLoS Genetics

Fungal Communication Requires the MAK-2 Pathway Elements STE-20 and RAS-2, the NRC-1 Adapter STE-50 and the MAP Kinase Scaffold HAM-5

(2014) Anne Dettmann et al.   PLoS Genetics

PRO40 Is a Scaffold Protein of the Cell Wall Integrity Pathway, Linking the MAP Kinase Module to the Upstream Activator Protein Kinase C

(2014) Ines Teichert et al.   PLoS Genetics

Tools for advanced and targeted genetic manipulation of the β-lactam antibiotic producer Acremonium chrysogenum

(2013) S. Bloemendal et al.   JOURNAL OF BIOTECHNOLOGY

The Yeast Snt2 Protein Coordinates the Transcriptional Response to Hydrogen Peroxide-Mediated Oxidative Stress

(2013) L. A. Baker et al.   MOLECULAR AND CELLULAR BIOLOGY

ProA, a transcriptional regulator of fungal fruiting body development, regulates leaf hyphal network development in theEpichloë festucae-Lolium perennesymbiosis

(2013) Aiko Tanaka et al.   MOLECULAR MICROBIOLOGY

The NADPH Oxidase Complexes in Botrytis cinerea: Evidence for a Close Association with the ER and the Tetraspanin Pls1

(2013) Ulrike Siegmund et al.   PLoS One

NADPH oxidases regulate septin-mediated cytoskeletal remodeling during plant infection by the rice blast fungus

(2013) L. S. Ryder et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cell-type specificity of ChIP-predicted transcription factor binding sites

(2012) Tony Håndstad et al.   BMC GENOMICS

Combining laser microdissection and RNA-seq to chart the transcriptional landscape of fungal development

(2012) Ines Teichert et al.   BMC GENOMICS

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

(2012) H. Thorvaldsdottir et al.   BRIEFINGS IN BIOINFORMATICS

NosA, a transcription factor important in Aspergillus fumigatus stress and developmental response, rescues the germination defect of a laeA deletion

(2012) Alexandra A. Soukup et al.   FUNGAL GENETICS AND BIOLOGY

A homologue of the human STRIPAK complex controls sexual development in fungi

(2012) Sandra Bloemendal et al.   MOLECULAR MICROBIOLOGY

Inferring direct DNA binding from ChIP-seq

(2012) Timothy L. Bailey et al.   NUCLEIC ACIDS RESEARCH

WSC-1 and HAM-7 Are MAK-1 MAP Kinase Pathway Sensors Required for Cell Wall Integrity and Hyphal Fusion in Neurospora crassa

(2012) Abhiram Maddi et al.   PLoS One

DNA regions bound at low occupancy by transcription factors do not drive patterned reporter gene expression in Drosophila

(2012) W. W. Fisher et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Whole-Genome Sequencing of Sordaria macrospora Mutants Identifies Developmental Genes

(2012) Minou Nowrousian et al.   G3-Genes Genomes Genetics

MEME-ChIP: motif analysis of large DNA datasets

(2011) Philip Machanick et al.   BIOINFORMATICS

FIMO: scanning for occurrences of a given motif

(2011) Charles E. Grant et al.   BIOINFORMATICS

The Neurospora crassa DCC-1 Protein, a Putative Histidine Kinase, Is Required for Normal Sexual and Asexual Development and Carotenogenesis

(2011) Carlos Barba-Ostria et al.   EUKARYOTIC CELL

Identification and Characterization of Genes Required for Cell-to-Cell Fusion in Neurospora crassa

(2011) Ci Fu et al.   EUKARYOTIC CELL

High conservation of transcription factor binding and evidence for combinatorial regulation across six Drosophila species

(2011) Qiye He et al.   NATURE GENETICS

Understanding the role of SOX9 in acquired diseases: lessons from development

(2011) James Pritchett et al.   TRENDS IN MOLECULAR MEDICINE

A Phenome-Based Functional Analysis of Transcription Factors in the Cereal Head Blight Fungus, Fusarium graminearum

(2011) Hokyoung Son et al.   PLoS Pathogens

Control of DNA replication: A new facet of Hox proteins?

(2010) Benoit Miotto et al.   BIOESSAYS

A Mutant Defective in Sexual Development Produces Aseptate Ascogonia

(2010) Sandra Bloemendal et al.   EUKARYOTIC CELL

Genes encoding a striatin-like protein (ham-3) and a forkhead associated protein (ham-4) are required for hyphal fusion in Neurospora crassa

(2010) Anna R. Simonin et al.   FUNGAL GENETICS AND BIOLOGY

The ham-5, rcm-1 and rco-1 genes regulate hyphal fusion in Neurospora crassa

(2010) M. S. Aldabbous et al.   MICROBIOLOGY-SGM

Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities

(2010) Sven Heinz et al.   MOLECULAR CELL

De novo Assembly of a 40 Mb Eukaryotic Genome from Short Sequence Reads: Sordaria macrospora, a Model Organism for Fungal Morphogenesis

(2010) Minou Nowrousian et al.   PLoS Genetics

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Identification of novel virulence factors associated with signal transduction pathways inAlternaria brassicicola

(2009) Yangrae Cho et al.   MOLECULAR MICROBIOLOGY

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

The Crucial Role of the Pls1 Tetraspanin during Ascospore Germination inPodospora anserinaProvides an Example of the Convergent Evolution of Morphogenetic Processes in Fungal Plant Pathogens and Saprobes

(2008) Karine Lambou et al.   EUKARYOTIC CELL

Mitogen-Activated Protein Kinase Cascade Required for Regulation of Development and Secondary Metabolism inNeurospora crassa

(2008) Gyungsoon Park et al.   EUKARYOTIC CELL

Hypovirus-Responsive Transcription Factor Genepro1of the Chestnut Blight FungusCryphonectria parasiticaIs Required for Female Fertility, Asexual Spore Development, and Stable Maintenance of Hypovirus Infection

(2008) Qihong Sun et al.   EUKARYOTIC CELL

NADPH Oxidases NOX-1 and NOX-2 Require the Regulatory Subunit NOR-1 To Control Cell Differentiation and Growth inNeurospora crassa

(2008) Nallely Cano-Domínguez et al.   EUKARYOTIC CELL

A genome-scale analysis of the cis-regulatory circuitry underlying sonic hedgehog-mediated patterning of the mammalian limb

(2008) S. A. Vokes et al.   GENES & DEVELOPMENT

The Nuclear Dbf2-Related Kinase COT1 and the Mitogen-Activated Protein Kinases MAK1 and MAK2 Genetically Interact to Regulate Filamentous Growth, Hyphal Fusion and Sexual Development in Neurospora crassa

(2008) S. Maerz et al.   GENETICS

Three  -Subunits of Heterotrimeric G Proteins and an Adenylyl Cyclase Have Distinct Roles in Fruiting Body Development in the Homothallic Fungus Sordaria macrospora

(2008) J. Kamerewerd et al.   GENETICS

Genomic Islands in the Pathogenic Filamentous Fungus Aspergillus fumigatus

(2008) Natalie D. Fedorova et al.   PLoS Genetics

The Aspergillus nidulans esdC (early sexual development) gene is necessary for sexual development and is controlled by veA and a heterotrimeric G protein

(2007) Kap-Hoon Han et al.   FUNGAL GENETICS AND BIOLOGY