PacBio high‐throughput multi‐locus sequencing reveals high genetic diversity in mushroom‐forming fungi

Phylogenetic conservatism of mycoparasitism and its contribution to pathogen antagonism

(2022) Edward G. Barge et al.   MOLECULAR ECOLOGY

Intragenomic variation in nuclear ribosomal markers and its implication in species delimitation, identification and barcoding in fungi

(2022) Soumitra Paloi et al.   Fungal Biology Reviews

High-accuracy long-read amplicon sequences using unique molecular identifiers with Nanopore or PacBio sequencing

(2021) Søren M. Karst et al.   NATURE METHODS

Perspectives and Benefits of High-Throughput Long-Read Sequencing in Microbial Ecology

(2021) Leho Tedersoo et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Lost in translation: Population genomics and long-read sequencing reveals relaxation of concerted evolution of the ribosomal DNA cistron

(2020) Keaton Tremble et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

High-throughput amplicon sequencing of the full-length 16S rRNA gene with single-nucleotide resolution

(2019) Benjamin J Callahan et al.   NUCLEIC ACIDS RESEARCH

PacBio amplicon sequencing for metabarcoding of mixed DNA samples from lichen herbarium specimens

(2019) Cécile Gueidan et al.   MycoKeys

Genome-based estimates of fungal rDNA copy number variation across phylogenetic scales and ecological lifestyles

(2018) Lotus A. Lofgren et al.   MOLECULAR ECOLOGY

Mycobiome diversity: high-throughput sequencing and identification of fungi

(2018) R. Henrik Nilsson et al.   NATURE REVIEWS MICROBIOLOGY

PacBio metabarcoding of Fungi and other eukaryotes: errors, biases and perspectives

(2017) Leho Tedersoo et al.   NEW PHYTOLOGIST

Phylogenetic relationships of Rhizoctonia fungi within the Cantharellales

(2016) Dolores Gónzalez et al.   Fungal Biology

The sequence of sequencers: The history of sequencing DNA

(2016) James M. Heather et al.   GENOMICS

Next-generation polyploid phylogenetics: rapid resolution of hybrid polyploid complexes using PacBio single-molecule sequencing

(2016) Carl J. Rothfels et al.   NEW PHYTOLOGIST

Genomics and metagenomics technologies to recover ribosomal DNA and single-copy genes from old fruit-body and ectomycorrhiza specimens

(2016) Leho Tedersoo et al.   MycoKeys

Next generation multilocus sequence typing (NGMLST) and the analytical software program MLSTEZ enable efficient, cost-effective, high-throughput, multilocus sequencing typing

(2015) Yuan Chen et al.   FUNGAL GENETICS AND BIOLOGY

AliView: a fast and lightweight alignment viewer and editor for large datasets

(2014) Anders Larsson   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Evolution of nutritional modes of Ceratobasidiaceae (Cantharellales, Basidiomycota) as revealed from publicly available ITS sequences

(2013) Vilmar Veldre et al.   Fungal Ecology