Depth-Dependent Distribution of Prokaryotes in Sediments of the Manganese Crust on Nazimov Guyots of the Magellan Seamounts

Bioaccumulation and risk assessment of potential toxic elements in the soil-vegetable system as influenced by historical wastewater irrigation

(2023) Xinling Ruan et al.   AGRICULTURAL WATER MANAGEMENT

Effects of salinity on anoxic–oxic system performance, microbial community dynamics and co-occurrence network during treating wastewater

(2023) Hui Chen et al.   CHEMICAL ENGINEERING JOURNAL

Distinct assembly processes and environmental adaptation of abundant and rare archaea in Arctic marine sediments

(2023) Jianxing Sun et al.   MARINE ENVIRONMENTAL RESEARCH

Oxygen and nitrogen production by an ammonia-oxidizing archaeon

(2022) Beate Kraft et al.   SCIENCE

Microbial Diversity in the Indian Ocean Sediments: An Insight into the Distribution and Associated Factors

(2022) Madhav Ambati et al.   CURRENT MICROBIOLOGY

Ecological stability of microbial communities in Lake Donghu regulated by keystone taxa

(2022) Shengwei Liu et al.   ECOLOGICAL INDICATORS

Spatial distribution and risk assessment of metal(loid)s in marine sediments in the Arctic Ocean and Bering Sea

(2022) Hui Zheng et al.   MARINE POLLUTION BULLETIN

Precipitation balances deterministic and stochastic processes of bacterial community assembly in grassland soils

(2022) Liyang Yang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Rare biosphere regulates the planktonic and sedimentary bacteria by disparate ecological processes in a large source water reservoir

(2022) Chenyuan Dang et al.   WATER RESEARCH

Microbiomes in the Challenger Deep slope and bottom-axis sediments

(2022) Ying-Li Zhou et al.   Nature Communications

Biogeographic Patterns and Elevational Differentiation of Sedimentary Bacterial Communities across River Systems in China

(2022) Sibo Zhang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Temperature mediated the balance between stochastic and deterministic processes and reoccurrence of microbial community during treating aniline wastewater

(2022) Hui Chen et al.   WATER RESEARCH

Environmental heterogeneity mediated prokaryotic community variations in marine sediments

(2022) Jianxing Sun et al.   ECOHYDROLOGY & HYDROBIOLOGY

Temporal change of prokaryotic community in surface sediments of the Chukchi Sea

(2022) Jianxing Sun et al.   ECOHYDROLOGY & HYDROBIOLOGY

Metagenomic insights into the metabolic and ecological functions of abundant deep-sea hydrothermal vent DPANN archaea

(2021) Ruining Cai et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Increasing inundation frequencies enhance the stochastic process and network complexity of soil archaeal community in coastal wetlands

(2021) Gui-Feng Gao et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Bioleaching of Copper-Containing Electroplating Sludge

(2021) Jianxing Sun et al.   JOURNAL OF ENVIRONMENTAL MANAGEMENT

Vertical diversity and association pattern of total, abundant and rare microbial communities in deep‐sea sediments

(2021) Yunhui Zhang et al.   MOLECULAR ECOLOGY

Nitrosopumilus zosterae sp. nov., an autotrophic ammonia-oxidizing archaeon of phylum Thaumarchaeota isolated from coastal eelgrass sediments of Japan

(2021) Tatsunori Nakagawa et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Microbial community structure in hadal sediments: high similarity along trench axes and strong changes along redox gradients

(2021) Clemens Schauberger et al.   ISME Journal

Soil pH and nutrients shape the vertical distribution of microbial communities in an alpine wetland

(2021) Enze Kang et al.   SCIENCE OF THE TOTAL ENVIRONMENT

The ecology of the plastisphere: Microbial composition, function, assembly, and network in the freshwater and seawater ecosystems

(2021) Changchao Li et al.   WATER RESEARCH

Deep ocean metagenomes provide insight into the metabolic architecture of bathypelagic microbial communities

(2021) Silvia G. Acinas et al.   Communications Biology

Impacts of global warming on marine microbial communities

(2021) Baskaran Abirami et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Characteristics of microbial community composition and its relationship with carbon, nitrogen and sulfur in sediments

(2021) Wenfei Liao et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Depth effects on bacterial community assembly processes in paddy soils

(2021) Weitao Li et al.   SOIL BIOLOGY & BIOCHEMISTRY

Contrasting bacterial and archaeal distributions reflecting different geochemical processes in a sediment core from the Pearl River Estuary

(2020) Wenxiu Wang et al.   AMB Express

Understanding the evolution of interspecies interactions in microbial communities

(2020) Florien A. Gorter et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Effects of a deep-sea mining experiment on seafloor microbial communities and functions after 26 years

(2020) T. R. Vonnahme et al.   Science Advances

Fungal diversity in deep-sea sediments from Magellan seamounts environment of the western Pacific revealed by high-throughput Illumina sequencing

(2020) Shuai Yang et al.   JOURNAL OF MICROBIOLOGY

Community assembly of bacteria and archaea in coastal waters governed by contrasting mechanisms: A seasonal perspective

(2020) Kai Wang et al.   MOLECULAR ECOLOGY

Global diversity of microbial communities in marine sediment

(2020) Tatsuhiko Hoshino et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Abundance and composition of airborne archaea during springtime mixed dust and haze periods in Beijing, China

(2020) Mutong Niu et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Using multibeam backscatter strength to analyze the distribution of manganese nodules: A case study of seamounts in the Western Pacific Ocean

(2020) Mingwei Wang et al.   APPLIED ACOUSTICS

H2 addition through a submerged membrane for in-situ biogas upgrading in the anaerobic digestion of sewage sludge

(2019) Natalia Alfaro et al.   BIORESOURCE TECHNOLOGY

Iron requirements and uptake strategies of the globally abundant marine ammonia-oxidising archaeon, Nitrosopumilus maritimus SCM1

(2019) Roxana T. Shafiee et al.   ISME Journal

In situ meta‐omic insights into the community compositions and ecological roles of hadal microbes in the Mariana Trench

(2019) Zhao‐Ming Gao et al.   ENVIRONMENTAL MICROBIOLOGY

Soil water content and pH drive archaeal distribution patterns in sediment and soils of water-level-fluctuating zones in the East Dongting Lake wetland, China

(2019) Wei Li et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Balance between community assembly processes mediates species coexistence in agricultural soil microbiomes across eastern China

(2019) Shuo Jiao et al.   ISME Journal

Characteristics of the archaeal and bacterial communities in core sediments from Southern Yap Trench via in situ sampling by the manned submersible Jiaolong

(2019) Lulu Fu et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Removal of Heavy Metals Using Rhamnolipid Biosurfactant on Manganese Nodules

(2019) Aleum Lee et al.   WATER AIR AND SOIL POLLUTION

Subseafloor life and its biogeochemical impacts

(2019) Steven D’Hondt et al.   Nature Communications

Drivers of Bacterial α- and β-Diversity Patterns and Functioning in Subsurface Hadal Sediments

(2019) Eugenio Rastelli et al.   Frontiers in Microbiology

Interaction and assembly processes of abundant and rare microbial communities during a diatom bloom process

(2019) Huajun Zhang et al.   ENVIRONMENTAL MICROBIOLOGY

Microbial community and geochemical analyses of trans-trench sediments for understanding the roles of hadal environments

(2019) Satoshi Hiraoka et al.   ISME Journal

Biogeographic patterns of microbial association networks in paddy soil within Eastern China

(2019) Xiaoling Wan et al.   SOIL BIOLOGY & BIOCHEMISTRY

Distribution Patterns of Microbial Community Structure Along a 7000-Mile Latitudinal Transect from the Mediterranean Sea Across the Atlantic Ocean to the Brazilian Coastal Sea

(2018) Jin Zhou et al.   MICROBIAL ECOLOGY

Potential recycling of thaumarchaeotal lipids by DPANN Archaea in seasonally hypoxic surface marine sediments

(2018) Yvonne A. Lipsewers et al.   ORGANIC GEOCHEMISTRY

Community Assembly Processes of the Microbial Rare Biosphere

(2018) Xiu Jia et al.   TRENDS IN MICROBIOLOGY

Sediment Depth-Dependent Spatial Variations of Bacterial Communities in Mud Deposits of the Eastern China Marginal Seas

(2018) Yanlu Qiao et al.   Frontiers in Microbiology

Insights into the ecology, evolution, and metabolism of the widespread Woesearchaeotal lineages

(2018) Xiaobo Liu et al.   Microbiome

Response of Soil Microbial Communities to Elevated Antimony and Arsenic Contamination Indicates the Relationship between the Innate Microbiota and Contaminant Fractions

(2017) Weimin Sun et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Co-existence of Anaerobic Ammonium Oxidation Bacteria and Denitrifying Anaerobic Methane Oxidation Bacteria in Sewage Sludge: Community Diversity and Seasonal Dynamics

(2017) Sai Xu et al.   MICROBIAL ECOLOGY

Stochastic Community Assembly: Does It Matter in Microbial Ecology?

(2017) Jizhong Zhou et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Biodiversity and species competition regulate the resilience of microbial biofilm community

(2017) Kai Feng et al.   MOLECULAR ECOLOGY

Biodiversity loss from deep-sea mining

(2017) C. L. Van Dover et al.   Nature Geoscience

Control on rate and pathway of anaerobic organic carbon degradation in the seabed

(2017) F. Beulig et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

From the Surface to the Deep-Sea: Bacterial Distributions across Polymetallic Nodule Fields in the Clarion-Clipperton Zone of the Pacific Ocean

(2017) Markus V. Lindh et al.   Frontiers in Microbiology

Preservation and Significance of Extracellular DNA in Ferruginous Sediments from Lake Towuti, Indonesia

(2017) Aurèle Vuillemin et al.   Frontiers in Microbiology

Biological responses to disturbance from simulated deep-sea polymetallic nodule mining

(2017) Daniel O. B. Jones et al.   PLoS One

Soil bacterial quantification approaches coupling with relative abundances reflecting the changes of taxa

(2017) Zhaojing Zhang et al.   Scientific Reports

Slow Microbial Life in the Seabed

(2016) Bo Barker Jørgensen et al.   Annual Review of Marine Science

Comparative Single-Cell Genomics of Chloroflexi from the Okinawa Trough Deep-Subsurface Biosphere

(2016) Heather Fullerton et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Effects of dispersal and selection on stochastic assembly in microbial communities

(2016) Sarah Evans et al.   ISME Journal

Soil pH and electrical conductivity are key edaphic factors shaping bacterial communities of greenhouse soils in Korea

(2016) Jeong Myeong Kim et al.   JOURNAL OF MICROBIOLOGY

Volcanic edifices on guyots of the Magellan Seamounts (Pacific Ocean)

(2016) M. E. Mel’nikov et al.   Russian Journal of Pacific Geology

Adjusting microbiome profiles for differences in microbial load by spike-in bacteria

(2016) Frank Stämmler et al.   Microbiome

High taxonomic variability despite stable functional structure across microbial communities

(2016) Stilianos Louca et al.   Nature Ecology & Evolution

Minor revision to V4 region SSU rRNA 806R gene primer greatly increases detection of SAR11 bacterioplankton

(2015) A Apprill et al.   AQUATIC MICROBIAL ECOLOGY

Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples

(2015) Alma E. Parada et al.   ENVIRONMENTAL MICROBIOLOGY

Hadal biosphere: Insight into the microbial ecosystem in the deepest ocean on Earth

(2015) Takuro Nunoura et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The ecology of the microbiome: Networks, competition, and stability

(2015) K. Z. Coyte et al.   SCIENCE

High-Throughput Metagenomic Technologies for Complex Microbial Community Analysis: Open and Closed Formats

(2015) Jizhong Zhou et al.   mBio

Improved Bacterial 16S rRNA Gene (V4 and V4-5) and Fungal Internal Transcribed Spacer Marker Gene Primers for Microbial Community Surveys

(2015) William Walters et al.   mSystems

A review of prokaryotic populations and processes in sub-seafloor sediments, including biosphere:geosphere interactions

(2014) R. John Parkes et al.   MARINE GEOLOGY

Stochasticity, succession, and environmental perturbations in a fluidic ecosystem

(2014) Jizhong Zhou et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Quantifying community assembly processes and identifying features that impose them

(2013) James C Stegen et al.   ISME Journal

Age and formation conditions of the Co-rich manganese crust on guyots of the Magellan seamounts

(2013) M. E. Melnikov et al.   LITHOLOGY AND MINERAL RESOURCES

Culturable populations of Acinetobacter can promptly respond to contamination by alkanes in mangrove sediments

(2013) Lidianne L. Rocha et al.   MARINE POLLUTION BULLETIN

High rates of microbial carbon turnover in sediments in the deepest oceanic trench on Earth

(2013) Ronnie N. Glud et al.   Nature Geoscience

Dynamics of the Methanogenic Archaea in Tropical Estuarine Sediments

(2013) María del Rocío Torres-Alvarado et al.   ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Climate Change Impacts on Marine Ecosystems

(2011) Scott C. Doney et al.   Annual Review of Marine Science

Incidence and diversity of phosphate-solubilising bacteria are linked to phosphorus status in grassland soils

(2011) Carolyn Mander et al.   SOIL BIOLOGY & BIOCHEMISTRY

Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea

(2010) C. B. Walker et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Changes in the soil microbial community structure with latitude in eastern China, based on phospholipid fatty acid analysis

(2009) Yuping Wu et al.   APPLIED SOIL ECOLOGY

Automated Modification of the Molybdenum Blue Colorimetric Method for Phosphorus Determination in Soil Extracts

(2008) María Dolores Hurtado et al.   COMMUNICATIONS IN SOIL SCIENCE AND PLANT ANALYSIS

Vertical distribution of bacterial and archaeal communities along discrete layers of a deep-sea cold sediment sample at the East Pacific Rise (∼13°N)

(2008) Youxun Li et al.   EXTREMOPHILES

Prokaryotic diversity, distribution and insights into their role in biogeochemical cycling in marine basalts

(2008) Olivia U Mason et al.   ISME Journal