Severe Prolonged Drought Favours Stress-Tolerant Microbes in Australian Drylands

Microbiome differential abundance methods produce different results across 38 datasets

(2022) Jacob T. Nearing et al.   Nature Communications

The Impact of Drought Stress on Soil Microbial Community, Enzyme Activities and Plants

(2022) Kalisa Bogati et al.   Agronomy-Basel

Humidity and low pH boost occurrence of Onygenales fungi in soil at global scale

(2022) Claudia Coleine et al.   SOIL BIOLOGY & BIOCHEMISTRY

Environmental stress destabilizes microbial networks

(2021) Damian J. Hernandez et al.   ISME Journal

Climate warming enhances microbial network complexity and stability

(2021) Mengting Maggie Yuan et al.   Nature Climate Change

Lower relative abundance of ectomycorrhizal fungi under a warmer and drier climate is linked to enhanced soil organic matter decomposition

(2021) José Ignacio Querejeta et al.   NEW PHYTOLOGIST

Seasonal variation and potential roles of dark septate fungi in an arid grassland

(2021) Cedric Ndinga-Muniania et al.   MYCOLOGIA

Using MicrobiomeAnalyst for comprehensive statistical, functional, and meta-analysis of microbiome data

(2020) Jasmine Chong et al.   Nature Protocols

Allometric Estimates of Aboveground Biomass Using Cover and Height Are Improved by Increasing Specificity of Plant Functional Groups in Eastern Australian Rangelands

(2020) Jeff Chieppa et al.   Rangeland Ecology & Management

Links between soil microbial communities, functioning, and plant nutrition under altered rainfall in Australian grassland

(2020) Raúl Ochoa‐Hueso et al.   ECOLOGICAL MONOGRAPHS

Effects of simulated drought on biological soil quality, microbial diversity and yields under long-term conventional and organic agriculture

(2020) Dominika Kundel et al.   FEMS MICROBIOLOGY ECOLOGY

Succession of the composition and co-occurrence networks of rhizosphere microbiota is linked to Cd/Zn hyperaccumulation

(2020) Jipeng Luo et al.   SOIL BIOLOGY & BIOCHEMISTRY

Fungal evolution: major ecological adaptations and evolutionary transitions

(2019) Miguel A. Naranjo‐Ortiz et al.   BIOLOGICAL REVIEWS

Use and abuse of correlation analyses in microbial ecology

(2019) Alex Carr et al.   ISME Journal

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

Changes in root‐exudate‐induced respiration reveal a novel mechanism through which drought affects ecosystem carbon cycling

(2019) Franciska T. Vries et al.   NEW PHYTOLOGIST

Dynamics of soil microbial C:N:P stoichiometry and its driving mechanisms following natural vegetation restoration after farmland abandonment

(2019) Jiwei Li et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Biogeography of arbuscular mycorrhizal fungal spore traits along an aridity gradient, and responses to experimental rainfall manipulation

(2019) Coline Deveautour et al.   Fungal Ecology

Increases in aridity lead to drastic shifts in the assembly of dryland complex microbial networks

(2019) Manuel Delgado‐Baquerizo et al.   LAND DEGRADATION & DEVELOPMENT

Drought consistently alters the composition of soil fungal and bacterial communities in grasslands from two continents

(2018) Raúl Ochoa-Hueso et al.   GLOBAL CHANGE BIOLOGY

Response of soil microbial communities to altered precipitation: A global synthesis

(2018) Zhenghu Zhou et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Keystone taxa as drivers of microbiome structure and functioning

(2018) Samiran Banerjee et al.   NATURE REVIEWS MICROBIOLOGY

Life in Dry Soils: Effects of Drought on Soil Microbial Communities and Processes

(2018) Joshua P. Schimel   Annual Review of Ecology Evolution and Systematics

Mapping the imprint of biotic interactions on β-diversity

(2018) Marc Ohlmann et al.   ECOLOGY LETTERS

Structure and function of the global topsoil microbiome

(2018) Mohammad Bahram et al.   NATURE

Soil bacterial networks are less stable under drought than fungal networks

(2018) Franciska T. de Vries et al.   Nature Communications

The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications

(2018) Rolf Henrik Nilsson et al.   NUCLEIC ACIDS RESEARCH

Effects of past and current drought on the composition and diversity of soil microbial communities

(2018) Catherine Preece et al.   SOIL BIOLOGY & BIOCHEMISTRY

WorldClim 2: new 1-km spatial resolution climate surfaces for global land areas

(2017) Stephen E. Fick et al.   INTERNATIONAL JOURNAL OF CLIMATOLOGY

Dryland climate change: Recent progress and challenges

(2017) J. Huang et al.   REVIEWS OF GEOPHYSICS

DNA Source Selection for Downstream Applications Based on DNA Quality Indicators Analysis

(2016) Gema Lucena-Aguilar et al.   BIOPRESERVATION AND BIOBANKING

Carbon content and climate variability drive global soil bacterial diversity patterns

(2016) Manuel Delgado-Baquerizo et al.   ECOLOGICAL MONOGRAPHS

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Microbial diversity drives multifunctionality in terrestrial ecosystems

(2016) Manuel Delgado-Baquerizo et al.   Nature Communications

DNA Source Selection for Downstream Applications Based on DNA Quality Indicators Analysis

(2016) Gema Lucena-Aguilar et al.   Biopreservation and Biobanking

Microbial Hub Taxa Link Host and Abiotic Factors to Plant Microbiome Variation

(2016) Matthew T. Agler et al.   PLOS BIOLOGY

Belowground Response to Drought in a Tropical Forest Soil. I. Changes in Microbial Functional Potential and Metabolism

(2016) Nicholas J. Bouskill et al.   Frontiers in Microbiology

Microbial ecology: Linking omics to biogeochemistry

(2016) Joshua Schimel   Nature Microbiology

Impacts of altered precipitation regimes on soil communities and biogeochemistry in arid and semi-arid ecosystems

(2014) Uffe N. Nielsen et al.   GLOBAL CHANGE BIOLOGY

Altered precipitation regime affects the function and composition of soil microbial communities on multiple time scales

(2013) L. H. Zeglin et al.   ECOLOGY

Climate change alters ecological strategies of soil bacteria

(2013) Sarah E. Evans et al.   ECOLOGY LETTERS

Hierarchical responses of plant-soil interactions to climate change: consequences for the global carbon cycle

(2013) Richard D. Bardgett et al.   JOURNAL OF ECOLOGY

Decoupling of soil nutrient cycles as a function of aridity in global drylands

(2013) Manuel Delgado-Baquerizo et al.   NATURE

Soil microbial responses to warming and increased precipitation and their implications for ecosystem C cycling

(2013) Naili Zhang et al.   OECOLOGIA

DNA Qualification Workflow for Next Generation Sequencing of Histopathological Samples

(2013) Michele Simbolo et al.   PLoS One

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Response of the Soil Microbial Community to Changes in Precipitation in a Semiarid Ecosystem

(2012) Melissa A. Cregger et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

New primers to amplify the fungal ITS2 region - evaluation by 454-sequencing of artificial and natural communities

(2012) Katarina Ihrmark et al.   FEMS MICROBIOLOGY ECOLOGY

Next-generation sequencing technologies for environmental DNA research

(2012) SHADI SHOKRALLA et al.   MOLECULAR ECOLOGY

Microbial interactions: from networks to models

(2012) Karoline Faust et al.   NATURE REVIEWS MICROBIOLOGY

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Cross-biome metagenomic analyses of soil microbial communities and their functional attributes

(2012) N. Fierer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transitions in bacterial communities along the 2000 km salinity gradient of the Baltic Sea

(2011) Daniel PR Herlemann et al.   ISME Journal

NBC: the Naive Bayes Classification tool webserver for taxonomic classification of metagenomic reads

(2010) G. L. Rosen et al.   BIOINFORMATICS

Fungal community responses to precipitation

(2010) CHRISTINE V. HAWKES et al.   GLOBAL CHANGE BIOLOGY

Global patterns in belowground communities

(2009) Noah Fierer et al.   ECOLOGY LETTERS

Adapt or disperse: understanding species persistence in a changing world

(2009) MATTY P. BERG et al.   GLOBAL CHANGE BIOLOGY