Comparative Analysis of Transposable Elements Reveals the Diversity of Transposable Elements in Decapoda and Their Effects on Genomic Evolution

Genome-Wide Screening of Transposable Elements in the Whitefly, Bemisia tabaci (Hemiptera: Aleyrodidae), Revealed Insertions with Potential Insecticide Resistance Implications

(2022) Marwa Zidi et al.   Insects

Miniature Inverted-Repeat Transposable Elements (MITEs) in the Two Lepidopteran Genomes of Helicoverpa armigera and Helicoverpa zea

(2022) Khouloud Klai et al.   Insects

Diversity of Harbinger-like Transposons in Teleost Fish Genomes

(2022) Ema Etchegaray et al.   Animals

Horizontal transfer of Buster transposons across multiple phyla and classes of animals

(2022) Zhongxia Guan et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Recurrent co-domestication of PIF/Harbinger transposable element proteins in insects

(2022) Dragomira N. Markova et al.   Mobile DNA

Transposable elements shape the evolution of mammalian development

(2021) Anna D. Senft et al.   NATURE REVIEWS GENETICS

Eusociality in snapping shrimps is associated with larger genomes and an accumulation of transposable elements

(2021) Solomon T. C. Chak et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

High genetic and epigenetic variation of transposable elements: Potential drivers to rapid adaptive evolution for the noxious invasive weed Mikania micrantha

(2021) Yingjuan Su et al.   Ecology and Evolution

Comparative genomics of tadpole shrimps (Crustacea, Branchiopoda, Notostraca): Dynamic genome evolution against the backdrop of morphological stasis

(2021) Andrea Luchetti et al.   GENOMICS

Genome-Wide Identification, Characterization, and Expression Analysis of DDE_Tnp_4 Family Genes in Eriocheir sinensis

(2021) Yuanfeng Xu et al.   Antibiotics-Basel

Genomic re-assessment of the transposable element landscape of the potato genome

(2020) Diego Zavallo et al.   PLANT CELL REPORTS

RepeatModeler2 for automated genomic discovery of transposable element families

(2020) Jullien M. Flynn et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Impact of transposable elements on genome size variation between two closely related crustacean species

(2020) Thomas Becking et al.   ANALYTICAL BIOCHEMISTRY

Transposable element abundance correlates with mode of transmission in microsporidian parasites

(2020) Nathalia Rammé Medeiros de Albuquerque et al.   Mobile DNA

A Field Guide to Eukaryotic Transposable Elements

(2020) Jonathan N. Wells et al.   Annual Review of Genetics

Mosquito genomes are frequently invaded by transposable elements through horizontal transfer

(2020) Elverson Soares de Melo et al.   PLoS Genetics

Screening of Helicoverpa armigera Mobilome Revealed Transposable Element Insertions in Insecticide Resistance Genes

(2020) Khouloud KLAI et al.   Insects

Diversity and evolution of the transposable element repertoire in arthropods with particular reference to insects

(2019) Malte Petersen et al.   BMC EVOLUTIONARY BIOLOGY

Evolution of Immune Systems From Viruses and Transposable Elements

(2019) Felix Broecker et al.   Frontiers in Microbiology

Global survey of mobile DNA horizontal transfer in arthropods reveals Lepidoptera as a prime hotspot

(2019) Daphné Reiss et al.   PLoS Genetics

Gene expression profiles of gill provide insights into the aerial respiration capacity of the Chinese mitten crab, Eriocheir sinensis

(2019) Xiaowen Chen et al.   AQUACULTURE

Cellular entry of white spot syndrome virus and antiviral immunity mediated by cellular receptors in crustaceans

(2019) Shu-cheng Zheng et al.   FISH & SHELLFISH IMMUNOLOGY

High frequency of horizontal transfer in Jockey families (LINE order) of drosophilids

(2019) Izabella L. Tambones et al.   Mobile DNA

The impact of transposable elements in adaptive evolution

(2018) Lukas Schrader et al.   MOLECULAR ECOLOGY

Horizontal transfer of retrotransposons between bivalves and other aquatic species of multiple phyla

(2018) Michael J. Metzger et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Role of Transposable Elements in Speciation

(2018) Antonio Serrato-Capuchina et al.   Genes

Identification of the key genes implicated in the transformation of OLP to OSCC using RNA-sequencing

(2017) Qiaozhen Yang et al.   ONCOLOGY REPORTS

Transposable Element Domestication As an Adaptation to Evolutionary Conflicts

(2017) Diwash Jangam et al.   TRENDS IN GENETICS

Using bioinformatic and phylogenetic approaches to classify transposable elements and understand their complex evolutionary histories

(2017) Irina R. Arkhipova   Mobile DNA

The Developmental Control of Transposable Elements and the Evolution of Higher Species

(2015) Marc Friedli et al.   Annual Review of Cell and Developmental Biology

Characterization of fossilized relatives of the White Spot Syndrome Virus in genomes of decapod crustaceans

(2015) Andrey Rozenberg et al.   BMC EVOLUTIONARY BIOLOGY

Comparative Analysis of Transposable Elements Highlights Mobilome Diversity and Evolution in Vertebrates

(2015) Domitille Chalopin et al.   Genome Biology and Evolution

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

(2015) Mihaela Pertea et al.   NATURE BIOTECHNOLOGY

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Remarkable Diversity of Endogenous Viruses in a Crustacean Genome

(2014) Julien Thézé et al.   Genome Biology and Evolution

“Ménage à Trois”: The Evolutionary Interplay between JSRV, enJSRVs and Domestic Sheep

(2014) Alessia Armezzani et al.   Viruses-Basel

LTR-Retrotransposons in R. exoculata and Other Crustaceans: The Outstanding Success of GalEa-Like Copia Elements

(2013) Mathieu Piednoël et al.   PLoS One

ggplot2: Elegant Graphics for Data Analysis

(2011) Cedric Ginestet   JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES A-STATISTICS IN SOCIETY

White Spot Syndrome Virus (WSSV) Concentrations in Crustacean Tissues - A Review of Data Relevant to Assess the Risk Associated with Commodity Trade

(2011) B. Oidtmann et al.   Transboundary and Emerging Diseases

Small RNA-Mediated Quiescence of Transposable Elements in Animals

(2010) Kuniaki Saito et al.   DEVELOPMENTAL CELL

Promiscuous DNA: horizontal transfer of transposable elements and why it matters for eukaryotic evolution

(2010) Sarah Schaack et al.   TRENDS IN ECOLOGY & EVOLUTION

Widespread occurence of mariner transposons in coastal crabs

(2008) Q.-T. Bui et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION